Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2579 ATGAGACCTCTCGCAAAGTTCTTTCACAAGTTTTGTGGGGAAATTGTAATCCTGTTAGCATCCCTCGTAATAGAACTTATCATTCTCATTCAGAAACTAAAATCGTCCTCGTCAAGTCCCATCAGCACCCACCAATACCTCAAATTCATCGAGAAGAAGAACCCCACCATTTGCTACACCAAAAGGTTGCTGAAGGCAGAACAGGGTTGTGGTGCAGAGTGCAGAGTATGCTTGTGCGAATTGGAGGAAGGGGAGAAGGTGAGGAAGTTGCAATGCCATCACATGTTTCATAGGGATTGTTTGGACAAGTGGCTGCAACAATATTGGGCTACGTGCCCTCTTTGTAGGAAGCAAGTGGTGCCGCCTGATGTCGTGTTGAAGCACCGTCTGCATCAGAGTCAAGCAGAGGAACAAGGTTTTGATGGGAATCACGATGACAACATTCTCTATTTTCTATCAGCATTTCGTCGTGGCAACACTCTGCATAGATACTTCTGA 498 0.4558 MRPLAKFFHKFCGEIVILLASLVIELIILIQKLKSSSSSPISTHQYLKFIEKKNPTICYTKRLLKAEQGCGAECRVCLCELEEGEKVRKLQCHHMFHRDCLDKWLQQYWATCPLCRKQVVPPDVVLKHRLHQSQAEEQGFDGNHDDNILYFLSAFRRGNTLHRYF* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2579 165 PANTHER - 1 160 - -
Pvu1g2579 165 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Pvu1g2579 165 SMART ring_2 74 115 IPR001841 -
Pvu1g2579 165 Pfam Ring finger domain 73 116 IPR001841 -
Pvu1g2579 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 122 IPR013083 -
Pvu1g2579 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 160 - -
Pvu1g2579 165 SUPERFAMILY RING/U-box 52 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2579 Pvu-Chr1 50768039 50768536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2579 72 127 C3H Transcription Factor Family AT1G15100 55.357 2.74e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2579 K16282 - gmx:102661897 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2705 2 42922246 42922892 Pvu1g2579 1 50768039 50768536 PCT