Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu1g2579 | ATGAGACCTCTCGCAAAGTTCTTTCACAAGTTTTGTGGGGAAATTGTAATCCTGTTAGCATCCCTCGTAATAGAACTTATCATTCTCATTCAGAAACTAAAATCGTCCTCGTCAAGTCCCATCAGCACCCACCAATACCTCAAATTCATCGAGAAGAAGAACCCCACCATTTGCTACACCAAAAGGTTGCTGAAGGCAGAACAGGGTTGTGGTGCAGAGTGCAGAGTATGCTTGTGCGAATTGGAGGAAGGGGAGAAGGTGAGGAAGTTGCAATGCCATCACATGTTTCATAGGGATTGTTTGGACAAGTGGCTGCAACAATATTGGGCTACGTGCCCTCTTTGTAGGAAGCAAGTGGTGCCGCCTGATGTCGTGTTGAAGCACCGTCTGCATCAGAGTCAAGCAGAGGAACAAGGTTTTGATGGGAATCACGATGACAACATTCTCTATTTTCTATCAGCATTTCGTCGTGGCAACACTCTGCATAGATACTTCTGA | 498 | 0.4558 | MRPLAKFFHKFCGEIVILLASLVIELIILIQKLKSSSSSPISTHQYLKFIEKKNPTICYTKRLLKAEQGCGAECRVCLCELEEGEKVRKLQCHHMFHRDCLDKWLQQYWATCPLCRKQVVPPDVVLKHRLHQSQAEEQGFDGNHDDNILYFLSAFRRGNTLHRYF* | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu1g2579 | 165 | PANTHER | - | 1 | 160 | - | - | |
Pvu1g2579 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 74 | 116 | IPR001841 | - | |
Pvu1g2579 | 165 | SMART | ring_2 | 74 | 115 | IPR001841 | - | |
Pvu1g2579 | 165 | Pfam | Ring finger domain | 73 | 116 | IPR001841 | - | |
Pvu1g2579 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 122 | IPR013083 | - | |
Pvu1g2579 | 165 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 160 | - | - | |
Pvu1g2579 | 165 | SUPERFAMILY | RING/U-box | 52 | 122 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu1g2579 | Pvu-Chr1 | 50768039 | 50768536 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu1g2579 | 72 | 127 | C3H Transcription Factor Family | AT1G15100 | 55.357 | 2.74e-17 | 72.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu1g2579 | K16282 | - | gmx:102661897 | 216.468 |