Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2576 ATGAATTCAGCATCCCCACAGTTCGTTTCCGCAAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCTTCCATGCCTTTAATAGATGATGCAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCACGGTATTCTGGGAGCACCTAGCAAGTATGATCAAGAAGCTAACAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAGTCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTCGAACGTGCAAGACATCAGGGAATGTACATAGGTGGTGGGTTGGACTCTAATCATATGGGTTTTTCTGGATCGGTAAATTCAGGAATTACAACCTTTGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATCACAGAACTGAGAACTGCTTTAAATGCTCATATTGGTGACATAGAACTCAGGATTCTAGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCCGCAAAAGCAGACGTGTTCTATGTCATGTCTGGTATGTGGAAAACAACAGCTGAAAGATTTTTCCTGTGGATCGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGGCCCCTGATTGAACCCCTCACAGAGAAACAACGGTTGGATATCTATAACCTAGGACAATCATGTCAGCAAGCAGAAGATGCCCTATCACAAGGTATGGACAAACTCCGGCACACACTAGCTGATAGTGTAGCAGCTGGACAGTTCATGGAGGGAACCTACATTCCACAGATGACTTCTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGGAACCTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCGGCTCGGTGCTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAACAGACCCCGTGAACCTGCTTAG 1089 0.4601 MNSASPQFVSARRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDDADMKLDSQSEDASHGILGAPSKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARHQGMYIGGGLDSNHMGFSGSVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDIELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEKQRLDIYNLGQSCQQAEDALSQGMDKLRHTLADSVAAGQFMEGTYIPQMTSAMEKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2576 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Pvu1g2576 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Pvu1g2576 362 Coils Coil 97 124 - -
Pvu1g2576 362 Pfam bZIP transcription factor 76 111 IPR004827 GO:0003700|GO:0006355
Pvu1g2576 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Pvu1g2576 362 Gene3D - 77 126 - -
Pvu1g2576 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Pvu1g2576 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Pvu1g2576 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Pvu1g2576 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Pvu1g2576 362 CDD bZIP_HBP1b-like 78 130 - -
Pvu1g2576 362 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2576 Pvu-Chr1 50739003 50743695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2576 1 362 Calmodulin-binding Proteins AT5G10030 70.330 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu1g2576 DOG1 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2576 K14431 - gmx:100793353 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2576 1 50739003 50743695 Pvu1g2576 1 50739003 50743695 ECH
Pvu2g2709 2 42954879 42962578 Pvu1g2576 1 50739003 50743695 PCT