Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2565 ATGGTTTCTAAAGAGCAAAAGAGAGCAGCACTGCATCAGAAGCTGCAACTACTTCGTTCTCTTACTAACTCTCATGCTCTAAACAAAACCTCGATCATAATAGATGCTTCAAAGTATATCCAAGAGTTAAAGCAAAAGGTGGAAGAATTGAATCAAGACGTAGCCAATGCACAGACTTCAACTGACCAAAATTCTTCGCCCATGGTTACAGTAGAAACCACGGAAAAGGGTTTTCTTATTAATGTTTTTTCAGCAAAGAGTTGCCCTGGTCTGTTTGTTTCCATATTGGAGTCATTTGAAGAGATGAGTCTTAACGTGCTTGAAGCTAGGGCTACTTGTATCGACACGTTTCGATTTCATGCTGTTGGAGAAAAGAATGAAGAACAAGGTAAGAATATTGATGCAGGAGCAGTGAAACAGGCAATCGGACAAGCAATACAGAATTGGAGCCAAAATGCTGACTAA 465 0.3978 MVSKEQKRAALHQKLQLLRSLTNSHALNKTSIIIDASKYIQELKQKVEELNQDVANAQTSTDQNSSPMVTVETTEKGFLINVFSAKSCPGLFVSILESFEEMSLNVLEARATCIDTFRFHAVGEKNEEQGKNIDAGAVKQAIGQAIQNWSQNAD* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2565 154 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 152 - -
Pvu1g2565 154 PANTHER TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN 1 152 - -
Pvu1g2565 154 Coils Coil 33 60 - -
Pvu1g2565 154 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 61 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2565 Pvu-Chr1 50661012 50662813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2565 1 100 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 27.273 1.20e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2565 - - vra:106755903 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2565 1 50661012 50662813 Pvu8g2266 8 53155693 53159073 ECH
Pvu8g0888 8 8681290 8683120 Pvu1g2565 1 50661012 50662813 ECH
Pvu6g0789 6 19457795 19460226 Pvu1g2565 1 50661012 50662813 ECH
Pvu1g2565 1 50661012 50662813 Pvu1g2565 1 50661012 50662813 ECH
Pvu1g2565 1 50661012 50662813 Pvu8g2266 8 53155693 53159073 PCT