Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2551 ATGAGGAGGATGATGGAGCCGTTGGAGGTGGAGGGGCGCGGGTTCTGCAATAAAAGAATAGCGCGCCATCATCTTAACTTAACCCTTTCAACAAATCCAATCACCACTTTACTAATACTAATGCTCCTCAATGGTTTCAACTTACAAGGAAAACTAGCCGTTACTCACTGTTTCTTGCAAACAAACACCATCTCTGAACTTAGCATTCATTCTCTCTCTCTCTCTCACGCTCTCAACCCCCGCGGCACCTACACTTCTTTATGTCGTCACGTGATCCTTCTCTCTCTTTCTCTCTCTCCTCACTACAAAAACCATCCTTCAACTGTTCCTCTCTATCTCCACATCACTTCCAACACACTCTCTTTCACTTCCACTCATTCAAAAACATCTCTTTTCGTTATGGTAGTGGAGAAAACCAACCTTAACTCTTGTCAGTTTTCACAACATGAAGACCATGTTTCTGACAAGAAGAAAGAAAGATGGAAGAAGACTCCTTCGAGTTGTTTTTTGTTTCTCTTCTGGGTGTGGACTCTGCTTCTCTCCACATGTTTCAAACCAGTTTTGTGTGAAGATGAGGGCTGGGATGGAGTGGTTGTGACAGCATCAAACTTGTTAGCACTTGAAGCGTTCAAGCAGGAGTTAGTTGATCCTGAAGGGTTCTTGCGGAGCTGGAATGACAGTGGCTTTGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCTAAGGGAGAGGTTATTGTGATCCAGCTTCCGTGGAAGGGATTGAAGGGGCGTATCACTGATAAAATTGGCCAGCTTCAAGGTCTTAGGAAGCTCAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCCACTTTTGGACTTCTTCCTAACCTTAGAGGTGTTCAGTTATTCAACAATAGGCTAACAGGTTCCATCCCTTCTTCCTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTCCTCACAGGACCAATCCCTTATAGTCTTGCCAATTCCACCAAACTTTATTGGCTTAACTTGAGTTTTAACTCCTTTTCTGGTCCCTTACCAGCTAGCCTAACTCACTCACTTTCCCTCACATTCCTTTCTCTTCAACATAATAATCTATCTGGTCCCCTTCCTAACTCTTGGGGTGGTGGGAGTTCCAAGAATGATGAGTTCTTTAGGCTTCGAAATTTGATCCTAGATCATAACTTTTTCACTGGAAACGTTCCTTCTTCTTTGGGTGGCTTAAGAGAACTGAATGAAATTTCCCTTAGTAATAATAGGTTTAGTGGAGCTATACCGAATGAAATAGGAACTCTTTCTCAGCTTAAGACACTAGACATTTCAAATAATGCCTTGAATGGGAGCTTGCCCGCTACCCTCTCTAATTTATCCTCGCTTACACTTCTGAATGTTGAGAACAACCTCATTGAAAATCAAATCCCTGGAACTTTAGGGAGTTTGCACAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTACAGGGCATATTCCTTCAAGTATTGCAAGCATTTCCACTCTTCGGCAGCTTGATTTTTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTAACAGTCAACGTAGTCTTGATCTCTTCAATGTTTCTTACAACAGCCTCTCAGGTTCTGTTCCCCTTCTACTTGCCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCCTCAACACCATGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCTCCACCTCATGAAATGTCAAAACACCACCATCATAGGAAGCTAAGTACCAAAGACATTATTCTCATTGTAGCAGGACTTCTTCTCATAGTCCTCATCGTACTTTGTTGCGTCCTTCTCTTCTGTCTGATCAGAAAGAGATCAACATCAAAGACCGAGAAGGGCAGAGGTGCAGGGAGAACTGGCACAATGAGGACAGAAAAAGGAATCCCTCCTGTTGCTGCTGGTGATATTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCGATAGCTTTTACAGCTGACGATTTATTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATTGCTAAAGGTCCGAGAGAATTTGAATCAGAAGTCAGTGTTCTAGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGGGCGTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTGTTGCTTCTTTCCTACACGGTAGTGGAACTGAAACATCCATTGATTGGCAAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGATTGTTGTACCTCCATTCCCAGGAGAACATTATACATGGAAACCTCACATCCAGCAATGTATTGCTTGACGAGAATACAAATGCTAAAATAGCAGATTTTGGTCTTTCTAGGCTGATGACAGCTGCTGCTAACACCAACGTGATAGCTACTGCAGGAGCATTGGGATACAGGGCACCAGAACTCTCAAAGCTGAAGAAAGCCAACTCCAAAACCGATATCTATAGTCTAGGTGTGATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGAGTAGATTTACCTCAGTGGGTTGCCTCTATTGTGAAAGAGGAGTGGACAAATGAGGTTTTTGATGCAGACTTAATGAGAGATGCTTCAACAGTTGGCGATGAGTTGCTAAATACATTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTGCAGCAGCTGGAAGAGATTAGAGCAGAGAGATCAGTGACAGCAAGTCCTGGGGATGATTCTATAATATAG 2955 0.4321 MRRMMEPLEVEGRGFCNKRIARHHLNLTLSTNPITTLLILMLLNGFNLQGKLAVTHCFLQTNTISELSIHSLSLSHALNPRGTYTSLCRHVILLSLSLSPHYKNHPSTVPLYLHITSNTLSFTSTHSKTSLFVMVVEKTNLNSCQFSQHEDHVSDKKKERWKKTPSSCFLFLFWVWTLLLSTCFKPVLCEDEGWDGVVVTASNLLALEAFKQELVDPEGFLRSWNDSGFGACSGGWVGIKCAKGEVIVIQLPWKGLKGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPSSLGYCPLLQSLDLSNNFLTGPIPYSLANSTKLYWLNLSFNSFSGPLPASLTHSLSLTFLSLQHNNLSGPLPNSWGGGSSKNDEFFRLRNLILDHNFFTGNVPSSLGGLRELNEISLSNNRFSGAIPNEIGTLSQLKTLDISNNALNGSLPATLSNLSSLTLLNVENNLIENQIPGTLGSLHNLSVLILSRNQFTGHIPSSIASISTLRQLDFSLNNLSGEIPVSFNSQRSLDLFNVSYNSLSGSVPLLLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHHHHRKLSTKDIILIVAGLLLIVLIVLCCVLLFCLIRKRSTSKTEKGRGAGRTGTMRTEKGIPPVAAGDIEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIAKGPREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGSGTETSIDWQTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTAAANTNVIATAGALGYRAPELSKLKKANSKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLMRDASTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRAERSVTASPGDDSII* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2551 984 Gene3D Ribonuclease Inhibitor 361 457 IPR032675 -
Pvu1g2551 984 Gene3D Transferase(Phosphotransferase) domain 1 775 981 - -
Pvu1g2551 984 Gene3D Phosphorylase Kinase; domain 1 703 774 - -
Pvu1g2551 984 Pfam Protein tyrosine and serine/threonine kinase 700 965 IPR001245 GO:0004672|GO:0006468
Pvu1g2551 984 Pfam Leucine rich repeat N-terminal domain 204 241 IPR013210 -
Pvu1g2551 984 MobiDBLite consensus disorder prediction 645 665 - -
Pvu1g2551 984 Gene3D Ribonuclease Inhibitor 458 584 IPR032675 -
Pvu1g2551 984 Gene3D Ribonuclease Inhibitor 202 360 IPR032675 -
Pvu1g2551 984 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 145 978 - -
Pvu1g2551 984 CDD STKc_IRAK 703 968 - -
Pvu1g2551 984 SUPERFAMILY L domain-like 240 579 - -
Pvu1g2551 984 SMART LRR_typ_2 291 315 IPR003591 -
Pvu1g2551 984 SMART LRR_typ_2 442 465 IPR003591 -
Pvu1g2551 984 SMART LRR_typ_2 466 489 IPR003591 -
Pvu1g2551 984 SMART LRR_typ_2 490 513 IPR003591 -
Pvu1g2551 984 SMART LRR_typ_2 267 290 IPR003591 -
Pvu1g2551 984 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 145 978 - -
Pvu1g2551 984 ProSiteProfiles Protein kinase domain profile. 697 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2551 984 SUPERFAMILY Protein kinase-like (PK-like) 701 970 IPR011009 -
Pvu1g2551 984 PRINTS Leucine-rich repeat signature 318 331 - -
Pvu1g2551 984 PRINTS Leucine-rich repeat signature 442 455 - -
Pvu1g2551 984 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Pvu1g2551 984 Pfam Leucine rich repeat 269 326 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2551 Pvu-Chr1 50572464 50575791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2551 194 969 Receptor kinase-like Gene Family AT3G51740 62.725 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pvu1g2551 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2551 - - pvu:PHAVU_001G246800g 1862.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2551 1 50572464 50575791 Pvu8g2278 8 53261226 53264542 PCT