Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2547 ATGATGCATATAAGAAGAAATTCACGGCAATCAAAGCATCCATTCCATGCTTATCCCTTTGAGACATTGTTGTCTGGTTCATGGCAAGCTGTAGAGTTCATAAAAATTGAGGCAGGAACTACGAGTCTGCAATGCATAGATAATCACCATAGGACCACGGAGAAGGGCCTTTTGTCAGACCTTAGAATAAGATCAAGGAAAGCCACTTTATCTGATTGCTCCAACTTTTTAAGACGTGGGATTGACATTTGTGTTCTCTCAGCCTCTCAGAGTGGTGATACTAATTCTGATAGATTTTGTGCTGACAATGTGTGGCTTGATGCTAAAATAAATTCTATACAGAGAAAACACCATAATTCAGGGTGCTCATGTCTGTATTATGTAAACCTCTATGTTAATCAAGGTTCACTTGGTAGAGAGATAAGAACTCTCAGTAAGGAGGTTAAGGTAATTGGAATAAATGAAATTGCCATCCTCCAAAAGCTTGAACGTAATACTTGTGAAGACCAACACTATCGATGGGAATCATCTGAAGATTGCTCCCAAGTATTGCATACTAAATTGGTACTAGGAAAATTTTTATCTGACCTTTCATGGTTAGTTGTTACATCTGCTTTAAAGAAGGTTTCATTCTATGCAAGATCTGTGGAAAACAAGATTGTGTATCAAATTTTAGGTAGTGATGCCACCGGCTCTTCATTAAACATGCATTCTAGTATGCGTGTTGCTAATTTTGAAGTGAACGATGGCACGATGAAGCCCATTGTTACTCAAGTTGATGTATCTGACACCAATACACATGATTCCCATTATGATGAAGTGTCACCATCTTATGATGTTGAGGGCTTAAGACGATCCAAACGTATGAACATACAACCTGAACGTTACTTAGGTTGTGGTAATGTTTCTGAAATAAAGGTTGGCAATGTTCGAACTTGGCCATACAAGATCATGAAAAGGAAAGATGATGATGATGTGTGTTCTTGCCGGCAGATTTTAGTGTACAGTAGGAGGAGAAAAAAGGAATTAAAGTCTGGTGAGGCCAACCAAAATGAAAATCAAACTCGACTTGCTAGTGTTCCTCTTCTTGAAGAGAGAGATTCATTAGCCCTTGAGCATCATGACCTCAATGACAAAGGTACTAGTAGTAATGCAAATTACAGCAACCATAAGCATAAGAGGAAGAGATTTTTAGATTCTGATCCTGGATGGGAAGACTTAAATTCCAATTTAAAGTCCAACAGAAATTATAGAAGCTTAAATGCAACTGACTACAAGGAAATAATTGATTCATACTTAAAGGATATTAATAGAACTCCTACAAAAGAAGAACCAACTGTAATGGACCTGTGGAAGGAAATAACGAAATTGGAGAAAAAGAAGGAAGCAGAAATACCTCAAAGAGAGGAAGAGGAACAAATCTCTGAGATGGATATGCTGTGGAGAGAAATGGAAATGGCATTGACATCATCTCATATTGAAGAAGGTTCAATTGGTGCCAATTTTGCTGAGAATTCGGAAGAATCTAATCACACTTGTCAACATGACTACAGACTGTATGAAGAAATTGGAATATATTGCTTCAAATGTGGCTTTGTGAAAACCGAGATAAAATATGTCACGCCACCCTTTATGAAAAAGTATTATCAAGTGAGGCAACAAGAGGAGAAGCAATGCAGTGGAAAAGAGGATGATAAAGATGATGATTTCCATCAGTTATCAAGTCGTGATGAACTAATTTCTATGGAACATGACAACGTTTGGAAGTTGATCCCTGAACTTAGAGAAAAGATGCATGTCCACCAAAAGAAAGCTTTCGAATTTCTTTGGCAAAATATTAGTGGGTCTATGGATCCAACACTAATGGATGCAGAATCCAAAAGAAGAGGGGGTTGTGTCATATCTCATTCTCCTGGATCTGGTAAAACTTTTCTCATCATTGCATTTCTCATTAGCTATTTAAAGCTATTCCCAGGGATGAAGCCTCTTGTCCTTGCTCCAACAACCACTCTTCACACTTGGCACAAAGAATTCATCAAATGGGATATTTCTGTGCCAGTGTATCTGATTCATGGGCGCAGTGAACCTCAGAAAGATGATATGCAAAATTCAACTGTTCTTCCTCATTTTCGAAATCCAAATAAAAATGTCAAGCATATTTTGAACTGCTTGGACAAGATAAAAAAGTGGCAAACACACCCAGGTGTTCTGGTCATGAGTTATACCTCATTTTTAGCATTAATGAGAGAGGGTTCAGAGTTTACACCCAGAAAGTATATGGCTAAAGCATTGAGGGAAAGATCCGGGATCCTGATACTTGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGTGTTGATGAAAGTACAAACAGATATAAGAATACTACTTTCTGGTACATTGTTTCAGAACAACTTCAGTGAATACTTTAACACACTTTGTTTGGCAAGACCAAAGTTTATTTACGAAGTGCTGAAAGAGTTAGACACGAATGGCAGAAGAAAAGGCAAAACAACAGAGAAGTCACGTCATTTGCTAGAGTCTCAAGCTAGAAAATTGTTCTTAGACAACATTACCAAGAAGATTGACTCAAGTAATCGACATGAGAGGATGCAAGGTCTAAACATGTTGAGAGAAATCACAAATGGTTTCATAGATATTTATGAAAGTGCAAGTTTTAACAGTGTTCCTGGCTTGAAAATGTTTACGTTGCTAATGAATACAACTGACCTGCAGAGTGAAGTTTTGATGAAACTGCACAAGAGAATGGCTGAGTGCACAGGGTACCCTCTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCATGGCTGGTTAAAACAGCCTCATATGCAAATAAGTTTATGGCTTTGGACCAACTGCAGCAGCTAGAGAAATGCAAGTTAGACTTGAAGGCAGGGTCAAAAGTAAAATTTGTTATGAGCCTTGTTCTCCATGTTATGGAGAAGGAGAAAGTACTTATATTCTGTCACAATCATGCACCTGTGAAGTTATTGGTAGAGTTATTTGAGATGGTGTTCAAATGGGAAAAGGGTAGAGAAATTTTGTTGCTTAATGGGGAACAAGACCTCTTTGAACGTGGAAAAGTGATAGATAAGTTTGAAGAACCTAGAGGAGCATCAAAGGTGCTCCTTGCTTCAATCAAAGCTTGTGGTGAAGGTATTAGTTTGACATCAGCTTCAAGAGTGATTTTTCTGGACTCAGAGTGGAATCCATCGAAGACAAAGCAAGCTATTGCAAGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGCATATCAGCTTTTGGCAAGAGGCACATTAGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTTTCTAGCATGATTTTCAGTGAGGCATTTCAGGAGAACACTTCACATTCACAAGCAAAGATGATTGAAGATGACATACTGAGGGAAATGGTTGAAGAGGACAAATCCAAATCAATTCACATGATACTCAAGAATGAAAAGGCTTCCACAAACTGA 3537 0.3828 MMHIRRNSRQSKHPFHAYPFETLLSGSWQAVEFIKIEAGTTSLQCIDNHHRTTEKGLLSDLRIRSRKATLSDCSNFLRRGIDICVLSASQSGDTNSDRFCADNVWLDAKINSIQRKHHNSGCSCLYYVNLYVNQGSLGREIRTLSKEVKVIGINEIAILQKLERNTCEDQHYRWESSEDCSQVLHTKLVLGKFLSDLSWLVVTSALKKVSFYARSVENKIVYQILGSDATGSSLNMHSSMRVANFEVNDGTMKPIVTQVDVSDTNTHDSHYDEVSPSYDVEGLRRSKRMNIQPERYLGCGNVSEIKVGNVRTWPYKIMKRKDDDDVCSCRQILVYSRRRKKELKSGEANQNENQTRLASVPLLEERDSLALEHHDLNDKGTSSNANYSNHKHKRKRFLDSDPGWEDLNSNLKSNRNYRSLNATDYKEIIDSYLKDINRTPTKEEPTVMDLWKEITKLEKKKEAEIPQREEEEQISEMDMLWREMEMALTSSHIEEGSIGANFAENSEESNHTCQHDYRLYEEIGIYCFKCGFVKTEIKYVTPPFMKKYYQVRQQEEKQCSGKEDDKDDDFHQLSSRDELISMEHDNVWKLIPELREKMHVHQKKAFEFLWQNISGSMDPTLMDAESKRRGGCVISHSPGSGKTFLIIAFLISYLKLFPGMKPLVLAPTTTLHTWHKEFIKWDISVPVYLIHGRSEPQKDDMQNSTVLPHFRNPNKNVKHILNCLDKIKKWQTHPGVLVMSYTSFLALMREGSEFTPRKYMAKALRERSGILILDEGHNPRSTKSRLRKVLMKVQTDIRILLSGTLFQNNFSEYFNTLCLARPKFIYEVLKELDTNGRRKGKTTEKSRHLLESQARKLFLDNITKKIDSSNRHERMQGLNMLREITNGFIDIYESASFNSVPGLKMFTLLMNTTDLQSEVLMKLHKRMAECTGYPLELELLITLGSIHPWLVKTASYANKFMALDQLQQLEKCKLDLKAGSKVKFVMSLVLHVMEKEKVLIFCHNHAPVKLLVELFEMVFKWEKGREILLLNGEQDLFERGKVIDKFEEPRGASKVLLASIKACGEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYAYQLLARGTLEEDKYRRTTWKEWVSSMIFSEAFQENTSHSQAKMIEDDILREMVEEDKSKSIHMILKNEKASTN* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2547 1178 Pfam SNF2-related domain 602 866 IPR000330 GO:0005524|GO:0140658
Pvu1g2547 1178 SMART ultradead3 594 835 IPR014001 -
Pvu1g2547 1178 Gene3D - 568 866 IPR038718 -
Pvu1g2547 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 769 1142 IPR027417 -
Pvu1g2547 1178 Coils Coil 1178 1178 - -
Pvu1g2547 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 825 IPR027417 -
Pvu1g2547 1178 MobiDBLite consensus disorder prediction 340 394 - -
Pvu1g2547 1178 CDD SF2_C_SNF 973 1109 - -
Pvu1g2547 1178 Gene3D - 906 1177 IPR027417 -
Pvu1g2547 1178 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1177 IPR044567 GO:0080188
Pvu1g2547 1178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 984 1154 IPR001650 -
Pvu1g2547 1178 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1177 - -
Pvu1g2547 1178 Pfam Helicase conserved C-terminal domain 981 1097 IPR001650 -
Pvu1g2547 1178 SMART helicmild6 1013 1098 IPR001650 -
Pvu1g2547 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 623 823 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2547 Pvu-Chr1 50545702 50550616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2547 1024 1116 RAD5 or RAD16-like Gene Family AT5G05130 43.617 9.14e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu1g2547 SNF2_N 7.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2547 K10875 - gmx:100781856 1682.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2547 1 50545702 50550616 Pvu1g2547 1 50545702 50550616 ECH
Pvu1g2547 1 50545702 50550616 Pvu8g2282 8 53300729 53305730 PCT