Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2543 ATGGATTCCGACTTCCCCAACAAAGCGTTGACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTTTCCGACCCCGTTCTCCAAGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTCTGCTCTGCAGCTTTAAGGACGTCGCCGTCGACGCCGCTACCGGTTCCGGAAAAACCCTAGCCTTTGTCGTCCCTCTCGTCGAGATTCTGCGCCGGTCCTGCTCTCATCCCAAGTCTCACCAGGTGCTAGGGATAATTATATCCCCTACAAGGGAGCTTTCGACCCAAATATATCATGTGGCACAACCATTCATTTCGACATTGGTAAATGTTAAGTCCATGCTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAAACAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACGCCTGGGAGGTTACATGACATAATGAAGCGGATGGATGTCTTGGATTTTAAAAACCTCGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTGCTATTATATCTCAATTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCGGGACTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATCCTTCGTCATCAAAACAGCCAGAGTCTTCGAAAACACCTTCAGGACTTCACATTGAGTACATGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGTTGTCCTTCCTGGTCTTTCTCTTTTGAAAGGTTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCAACATTTACATCCCTTTCAAATGGAATTCTGCTATGTACGGATGTTGCTGCACGTGGACTTGACATACCAGGTGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCTCGGCTGGGAAAACAGGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATTCCTCTCCAAGAGAGAATATGTTCTGATGGTGCATTCGATGTTATTCCTGAGATTCGTTCTGCTGCCAAAAAAGATCGCGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTAAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGACATGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACATCATTCACTTTCCACTGACGGATTTGAACCAGTTGAAGATGTCAATTTCCAGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCTAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCGAAACCTAAAAAACCGAAGAAAACTCCAGATGCTGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCGGCAGACAATAGAAGACGAGGAGGAGTTGATGCAAGAATACCGATTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1767 0.4392 MDSDFPNKALTSTRFSDLNPPLSDPVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSHPKSHQVLGIIISPTRELSTQIYHVAQPFISTLVNVKSMLLVGGAEVKADINKIEEEGANILIGTPGRLHDIMKRMDVLDFKNLEILILDEADRLLDMGFQKQITAIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDPSSSKQPESSKTPSGLHIEYMECEADKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGVVLPGLSLLKGFSLIPLHGKMKQSAREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLQERICSDGAFDVIPEIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYILRWKELEIGKLAMGHGLLQLPSMPEVKHHSLSTDGFEPVEDVNFQDIKYRDKSREKQRKKNLLAKKEAKEKEPKPKKPKKTPDAAVMRKKTARQRRARQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2543 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Pvu1g2543 588 MobiDBLite consensus disorder prediction 506 554 - -
Pvu1g2543 588 Gene3D - 3 227 IPR027417 -
Pvu1g2543 588 MobiDBLite consensus disorder prediction 227 249 - -
Pvu1g2543 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Pvu1g2543 588 CDD SF2_C_DEAD 254 384 - -
Pvu1g2543 588 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Pvu1g2543 588 SMART helicmild6 290 375 IPR001650 -
Pvu1g2543 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Pvu1g2543 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Pvu1g2543 588 SMART DUF4217_3 413 476 IPR025313 -
Pvu1g2543 588 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Pvu1g2543 588 PANTHER RNA HELICASE 25 586 - -
Pvu1g2543 588 CDD DEADc_DDX55 26 224 - -
Pvu1g2543 588 Coils Coil 538 565 - -
Pvu1g2543 588 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 586 - -
Pvu1g2543 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Pvu1g2543 588 Pfam Domain of unknown function (DUF4217) 417 474 IPR025313 -
Pvu1g2543 588 Gene3D - 253 485 IPR027417 -
Pvu1g2543 588 Coils Coil 500 523 - -
Pvu1g2543 588 SMART ultradead3 34 254 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2543 Pvu-Chr1 50512380 50517494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2543 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 29.223 3.99e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2543 K14809 - gmx:100801482 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2543 1 50512380 50517494 Pvu1g2543 1 50512380 50517494 ECH