Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu1g2543 | ATGGATTCCGACTTCCCCAACAAAGCGTTGACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTTTCCGACCCCGTTCTCCAAGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTCTGCTCTGCAGCTTTAAGGACGTCGCCGTCGACGCCGCTACCGGTTCCGGAAAAACCCTAGCCTTTGTCGTCCCTCTCGTCGAGATTCTGCGCCGGTCCTGCTCTCATCCCAAGTCTCACCAGGTGCTAGGGATAATTATATCCCCTACAAGGGAGCTTTCGACCCAAATATATCATGTGGCACAACCATTCATTTCGACATTGGTAAATGTTAAGTCCATGCTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAAACAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACGCCTGGGAGGTTACATGACATAATGAAGCGGATGGATGTCTTGGATTTTAAAAACCTCGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTGCTATTATATCTCAATTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCGGGACTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATCCTTCGTCATCAAAACAGCCAGAGTCTTCGAAAACACCTTCAGGACTTCACATTGAGTACATGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGTTGTCCTTCCTGGTCTTTCTCTTTTGAAAGGTTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCAACATTTACATCCCTTTCAAATGGAATTCTGCTATGTACGGATGTTGCTGCACGTGGACTTGACATACCAGGTGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCTCGGCTGGGAAAACAGGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATTCCTCTCCAAGAGAGAATATGTTCTGATGGTGCATTCGATGTTATTCCTGAGATTCGTTCTGCTGCCAAAAAAGATCGCGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTAAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGACATGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACATCATTCACTTTCCACTGACGGATTTGAACCAGTTGAAGATGTCAATTTCCAGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCTAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCGAAACCTAAAAAACCGAAGAAAACTCCAGATGCTGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCGGCAGACAATAGAAGACGAGGAGGAGTTGATGCAAGAATACCGATTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA | 1767 | 0.4392 | MDSDFPNKALTSTRFSDLNPPLSDPVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSHPKSHQVLGIIISPTRELSTQIYHVAQPFISTLVNVKSMLLVGGAEVKADINKIEEEGANILIGTPGRLHDIMKRMDVLDFKNLEILILDEADRLLDMGFQKQITAIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDPSSSKQPESSKTPSGLHIEYMECEADKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGVVLPGLSLLKGFSLIPLHGKMKQSAREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLQERICSDGAFDVIPEIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYILRWKELEIGKLAMGHGLLQLPSMPEVKHHSLSTDGFEPVEDVNFQDIKYRDKSREKQRKKNLLAKKEAKEKEPKPKKPKKTPDAAVMRKKTARQRRARQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL* | 589 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu1g2543 | 588 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 90 | 394 | IPR027417 | - | |
Pvu1g2543 | 588 | MobiDBLite | consensus disorder prediction | 506 | 554 | - | - | |
Pvu1g2543 | 588 | Gene3D | - | 3 | 227 | IPR027417 | - | |
Pvu1g2543 | 588 | MobiDBLite | consensus disorder prediction | 227 | 249 | - | - | |
Pvu1g2543 | 588 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 170 | 178 | IPR000629 | - | |
Pvu1g2543 | 588 | CDD | SF2_C_DEAD | 254 | 384 | - | - | |
Pvu1g2543 | 588 | Pfam | Helicase conserved C-terminal domain | 263 | 375 | IPR001650 | - | |
Pvu1g2543 | 588 | SMART | helicmild6 | 290 | 375 | IPR001650 | - | |
Pvu1g2543 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 224 | IPR014001 | - | |
Pvu1g2543 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 266 | 422 | IPR001650 | - | |
Pvu1g2543 | 588 | SMART | DUF4217_3 | 413 | 476 | IPR025313 | - | |
Pvu1g2543 | 588 | Pfam | DEAD/DEAH box helicase | 39 | 212 | IPR011545 | GO:0003676|GO:0005524 | |
Pvu1g2543 | 588 | PANTHER | RNA HELICASE | 25 | 586 | - | - | |
Pvu1g2543 | 588 | CDD | DEADc_DDX55 | 26 | 224 | - | - | |
Pvu1g2543 | 588 | Coils | Coil | 538 | 565 | - | - | |
Pvu1g2543 | 588 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX55 | 25 | 586 | - | - | |
Pvu1g2543 | 588 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 15 | 43 | IPR014014 | GO:0003724 | |
Pvu1g2543 | 588 | Pfam | Domain of unknown function (DUF4217) | 417 | 474 | IPR025313 | - | |
Pvu1g2543 | 588 | Gene3D | - | 253 | 485 | IPR027417 | - | |
Pvu1g2543 | 588 | Coils | Coil | 500 | 523 | - | - | |
Pvu1g2543 | 588 | SMART | ultradead3 | 34 | 254 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu1g2543 | Pvu-Chr1 | 50512380 | 50517494 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu1g2543 | 13 | 384 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.223 | 3.99e-44 | 160 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu1g2543 | K14809 | - | gmx:100801482 | 1025 |