Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2541 ATGCTTTTAAGCTTTTACTCCCAAACCAAGCAAGGAATCTGTAATCAAATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGAGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCTATTCAGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGTTGTGTTGGGGCCATATCCTATTTACAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCTGTGATGCCAAATCCAGAAATGGAAAACCCAGATCACAAATCTTACCTTCTCCACAATGAACTCCCTCAGTTTCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATGCTGTCACAAGAGAGAGCATTTATGGACATGATTTGGTTTCCTGA 546 0.4414 MLLSFYSQTKQGICNQMAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIQQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPDHKSYLLHNELPQFLNYASSSNVIYDAVTRESIYGHDLVS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2541 181 Pfam Lateral organ boundaries (LOB) domain 22 119 IPR004883 -
Pvu1g2541 181 Coils Coil 101 121 - -
Pvu1g2541 181 ProSiteProfiles LOB domain profile. 21 122 IPR004883 -
Pvu1g2541 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 17 173 - -
Pvu1g2541 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2541 Pvu-Chr1 50490786 50491694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2541 19 148 AS2 family AT2G30130 79.104 4.07e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu1g2541 LOB 3.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2541 - - gmx:121173085 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2541 1 50490786 50491694 Pvu8g2286 8 53342368 53343134 ECH
Pvu1g2541 1 50490786 50491694 Pvu1g2541 1 50490786 50491694 ECH
Pvu1g2541 1 50490786 50491694 Pvu8g2286 8 53342368 53343134 PCT