Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2528 ATGTCGAACCCAGATACACGATCATTCACTTGGCACTACACAGAACTCGATGACAGGGACCTCGAGATCCGAGGAAGGACTTTGTTCTTCGTCATCGTACTCTTCTCCATTATCCTTCTCGTCACGGTTCTCTTCATCTACACGCGCTGGGTTTGCCGCTACCAGGGGCGCCTTCCCACCACAGTTTTTTCCGCCGCTGCCCACGCGCCGCCACTCCTGCCAGCACAGGGACTGGACCCCGCAACCATCAAGAAACTGCCCATAATCCTTCACCACGCGCCCTCGGATCGCGACGAAAGCGCGTGGGACGAAACCGAGTGTAGCATCTGCCTCGGCGAGTTCAGAGATGGCGAGAAATTGAAGGTTTTGCCGGCGTGCGACCATTATTTCCACTGTGAATGTGTTGATAGGTGGCTCACTCTCCACTCAAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCTTTCCCAAAGATTTTGATTCAGGAACCACCCCTAAGAATTGATTTCCAGTTCTAG 525 0.5314 MSNPDTRSFTWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGRLPTTVFSAAAHAPPLLPAQGLDPATIKKLPIILHHAPSDRDESAWDETECSICLGEFRDGEKLKVLPACDHYFHCECVDRWLTLHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2528 174 SMART ring_2 107 148 IPR001841 -
Pvu1g2528 174 Pfam Ring finger domain 106 149 IPR001841 -
Pvu1g2528 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 155 IPR013083 -
Pvu1g2528 174 SUPERFAMILY RING/U-box 97 155 - -
Pvu1g2528 174 CDD RING-H2_PA-TM-RING 106 149 - -
Pvu1g2528 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pvu1g2528 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 164 IPR044675 -
Pvu1g2528 174 PANTHER RING-H2 FINGER PROTEIN ATL66 2 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2528 Pvu-Chr1 50397046 50398534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2528 11 157 C3H Transcription Factor Family AT3G11110 45.333 1.41e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2528 - - gmx:100803278 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2528 1 50397046 50398534 Pvu8g2302 8 53500144 53500882 PCT