Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2527 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGAGTATGGAAAACTACTATGATTCTGGCTGGCACATGGGCACCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTTGCAGTACCTACACAAATACTGCCTCATGTCACTGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGGGCTGCAGAAGAGAGAGCAATGAGTGCTTCCAAGAGTCACAGTCAAGCAGAGAAAAGGCGTAGAGACAGAATCAATGCACAGCTCGCAACTCTCAGAAAACTTATTCCCAAATCTGATAAGATGGACAAGGCAGCTTTACTAGGCAGTGTGATAGACCATGTCAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCTTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTGTGACCATGTTCAAGATGAAAGCTGCACTAAAGTGAACAAATTGAAGGAAAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAGGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTAGGTGGCAGGATCAAAAGCATATTGGTGCTTTGTTCTAAGGATGGTGAAGAGGGTGTTTGCCTCACCACTCTCAAACAGTCCCTCAAATCTGCCGTCACCAAAATAGCTTCATCTTCCATGACATCTAATTGTCCCACCAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCGTTGCCTACAGTAA 819 0.4396 MGDKRLRNHGRNFRMVSIVSMENYYDSGWHMGTSWAQCSDHSSSFAVPTQILPHVTDSASLQFGEFHSWPLPIEGAAEERAMSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSRAFTVPTEIDEVSIDCDHVQDESCTKVNKLKENIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDGEEGVCLTTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSRCLQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2527 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 135 IPR036638 GO:0046983
Pvu1g2527 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Pvu1g2527 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Pvu1g2527 272 CDD bHLH_AtAIG1_like 78 155 - -
Pvu1g2527 272 Gene3D - 77 141 IPR036638 GO:0046983
Pvu1g2527 272 SMART finulus 89 138 IPR011598 GO:0046983
Pvu1g2527 272 PANTHER TRANSCRIPTION FACTOR BHLH51 46 270 - -
Pvu1g2527 272 PANTHER TRANSCRIPTION FACTOR BHLH30 46 270 IPR045847 GO:0003700|GO:0006355
Pvu1g2527 272 MobiDBLite consensus disorder prediction 78 97 - -
Pvu1g2527 272 CDD ACT_UUR-ACR-like 179 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2527 Pvu-Chr1 50385367 50387821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2527 21 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.825 2.69e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g2527 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2527 - - gmx:100799687 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2527 1 50385367 50387821 Pvu1g2527 1 50385367 50387821 ECH
Pvu1g2527 1 50385367 50387821 Pvu8g2304 8 53523280 53524919 PCT