Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2520 ATGAAAACACTAACTTCCTCCTCCGTCACCCTCTGTCTTGTCGTCGCCGCCCTGCTTATACTTTCTCTACCACGCTCTTCCCATGGCCTCGGCTCCGGCGCCACCCTTACCATCTCTGACGCCTCCTCCACCGTGTGCGCCGTCGTGGCACGCGAGTCCACGCGCCGCATTGAGTGTTACCGTCAGGGGCAGATTGCCTCCATCACTCCCAACGCTAGTTTTTCAACGATTTCGGGTGGGAGGAACTACTTCTGTGGTCTAAGGTCAAGCAACTCCGATTTACTATGTTGGAACACAAGCTCTTCCTTCGAAAGGAGAAGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTAGCCGTTGGGGATACCCACCTTTGCGCCACCGAGGTGGGCGATGGCGCGGTGAAGTGCTGGAGAACCGGTGACACGTTTCAGCTTCCTTCTGCGACTGATAAATTCGCTTCGATTTCATCTGGGACTGGCTTCTCTTGCGGAATTTTGAAGAATAGTTATCGGGTTCGGTGCTGGGGAGACACCAGCGTTTCGGATTTAACGGAACGCATTGAGAGTGTATTTGGGAACATGTCCATGTTGAGTCTTGTCGCAGGTGGTTCACATGTTTGTGGATTGAACTCCACTGGGTTTTTGGTATGTGGAGGAAATAACGATTCTGGGCAACGTGATTTTCCTCAAGGTGGGGCTTTTGAGTATTCTGGGTTGGCGCTTGGAGCTGAACATGGTTGTGCTATAAGAGGATTGAATGGTTCGGTTGTGTGTTGGGGTGGCAATGGGAGTTTCTCGGTGAATAATGTTACTGAAGGAGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAATTTTGTTTGTGGATTGACAACAAACAATTTGAAAGTGGTGTGTTGGGGTCCCGGCTGGTCAAATAGTTCGACGTTTGAGCTTCCTTTTTCAACTGTTCTTCCAGGTTCTTGTGTTCAATCTTCTTGTGAGTGTGGTTCATATCTTGATTCTCAATCTCTATGCTCCGGCTCTGGTAACATTTGTAAACCAATGACCTGTAAGCTTCAAACAACAGCTCCGCCTCCGCCATCACTGTCACCGCCTCCACCGTCAATGTCACCTCCGCCACCACCACCGCCACCACCTTCGTCATCACGATCAAAGACCTTGACGAACGGGTTATTGGCATTTGCTATTATCGGTTCTGTGGGAGCTTTTGCTGGAATATGCACTATAGTTTATTGCTTGTGGAGTGGAGTTTGTTTTGGGAAGAAGAAAGTCCACAGTTCCGTGCAGCCTACAATCACAAGAGGTAGCAGTGGTTCAAATGGGGGAGGTGCTTCTAATAATAGCAATTCTTCAATATCGTCTATGATTATGCGTCAGACTTCAATGATAATGAGGCGCCAGAGGAGTGGAACCTCATCAACAAAGCACCCAGACAGGGCTGAGGAGTTCACCCTGGCTGAGCTTGTGGCAGCCACCAACAATTTCTTACTTGAAAACAAGATTGGAGCTGGAAGCTTTGGTGTTGTGTACAAAGGGAAACTCGCGGATGGACGCGAGGTGGCCATCAAGAGGGGTGAAACTGGTTCCAAGATGAAGAAGTTTCAAGAGAAGGAAAGTGCATTTGAGTCTGAATTGGCCTTCTTGTCTCGCCTACACCACAAGCACTTGGTTGGACTTGTTGGGTTCTGCGAAGAAAAAGATGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCGCTGTATGATCATTTGCATGACAAGAACAATGTGGAGAAGGGTAGCAGTGTGTTGAATTATTGGAAAATGAGGATCAAAATTGCTTTGGATGCTGCTCGGGGAATAGAATATCTTCACAATTATGCAGTTCCATCAATTATTCACAGAGACATCAAGTCTTCTAACATTCTCATTGATGCTACTTGGACGGCAAGAGTATCAGATTTTGGATTGTCTTTGATGAGTCCAGAACCTGACCGTGATTACCGACCAATGAAGGCAGTAGGAACCGTTGGATACATTGATCCTGAGTACTACGGTTTAAATGTATTGACTGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTACTCGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGTGAAGATGGAGGCACCCCACTGAGTCTGGTGGACTTTGCAGTGCCTCGTATTTTGGCTGGAGAAATGGTGAAAATTTTGGATCCAAGGGTTGGAACACCCGATGAGAAAGAGGCAGAGGCTGTGGAATTAGTGGCCTATACAGCTATCTATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGTCAATTTGGAGAGGGCTTTGGGTATTTGTGAGAGTAGCCATGATAGCATTTCCAGTGGCTCTATCTCTGTTGTTTCAGAATGA 2421 0.4696 MKTLTSSSVTLCLVVAALLILSLPRSSHGLGSGATLTISDASSTVCAVVARESTRRIECYRQGQIASITPNASFSTISGGRNYFCGLRSSNSDLLCWNTSSSFERRRLYNDSSVPLENLAVGDTHLCATEVGDGAVKCWRTGDTFQLPSATDKFASISSGTGFSCGILKNSYRVRCWGDTSVSDLTERIESVFGNMSMLSLVAGGSHVCGLNSTGFLVCGGNNDSGQRDFPQGGAFEYSGLALGAEHGCAIRGLNGSVVCWGGNGSFSVNNVTEGVSFEVIVSGSNFVCGLTTNNLKVVCWGPGWSNSSTFELPFSTVLPGSCVQSSCECGSYLDSQSLCSGSGNICKPMTCKLQTTAPPPPSLSPPPPSMSPPPPPPPPPSSSRSKTLTNGLLAFAIIGSVGAFAGICTIVYCLWSGVCFGKKKVHSSVQPTITRGSSGSNGGGASNNSNSSISSMIMRQTSMIMRRQRSGTSSTKHPDRAEEFTLAELVAATNNFLLENKIGAGSFGVVYKGKLADGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNYWKMRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPEPDRDYRPMKAVGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGTPLSLVDFAVPRILAGEMVKILDPRVGTPDEKEAEAVELVAYTAIYCVNLEGKDRPTMADIVVNLERALGICESSHDSISSGSISVVSE* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2520 806 ProSiteProfiles Protein kinase domain profile. 497 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2520 806 SUPERFAMILY RCC1/BLIP-II 67 302 IPR009091 -
Pvu1g2520 806 Gene3D Phosphorylase Kinase; domain 1 456 577 - -
Pvu1g2520 806 SUPERFAMILY Protein kinase-like (PK-like) 474 782 IPR011009 -
Pvu1g2520 806 MobiDBLite consensus disorder prediction 358 386 - -
Pvu1g2520 806 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Pvu1g2520 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Pvu1g2520 806 SMART serkin_6 497 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2520 806 Gene3D - 60 333 IPR009091 -
Pvu1g2520 806 MobiDBLite consensus disorder prediction 433 453 - -
Pvu1g2520 806 Pfam Protein kinase domain 500 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2520 806 MobiDBLite consensus disorder prediction 358 384 - -
Pvu1g2520 806 Gene3D Transferase(Phosphotransferase) domain 1 578 797 - -
Pvu1g2520 806 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 5 803 IPR044815 GO:0004674
Pvu1g2520 806 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 5 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2520 Pvu-Chr1 50300459 50303474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2520 1 806 Receptor kinase-like Gene Family AT3G55950 58.575 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pvu1g2520 Pkinase 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2520 - - gmx:100786639 1287.32