Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2519 ATGGCGAATTCAGGAGCATCCCTTGTCCATAGTTTTGCTTCGATAGTGGAATATGCTATTAGAAGTATTGGAGGAGATTTGGGGGCATTTCCTTTGCGTGATTTTTCTTTCGCAGTGGAGAATGCGTGGAGTAGTATTGGAGGAGATTTGGGAGCAGTACCTGTTCGTGGTTTTGCTTCTATAGTGGAGAATATGATGAGAAGTGTTGGAGGAGATTTGAGAGCATTACCCGTGCATGGTTTTGCTTCGGCAGTGGAGAATGCAATGATAAGTATTGGAGGAGATTTGGGAGTATCACCCATGCAGGGTTTTGCTTCGAGAGTGGAGAATGCTATGAGTAGCATTGGTGGAGATTTGGGAACATCCCATTCCCCTGTGCATGGTTTTCAAGTATTCACCTTACTTGAGCTTGCAGCAGCCACCAACAATTTCTCAGTTGACAACAAGATTCGCGCTGGAAGCTCTAGTGTTGTGTACAGGGGAAAACTCGTTGATGGTAGTGAGGTTACAATAGAAAGAGTAGAAAGGTGGAGCAGTAGAACGGTGGAAGAGGCCTTCTGGTGGAGGAGAACGTCTAGTTTGAAGATTTTGCCCGGTTTACGTCCCAAGAACTTGGTTGGGCTGGTTGGGTTGTGTGAGGAGAAAAATGAAAGGGTGTTGGTGTATGAGGGCATGAAGAATGGGTCATTGTATGATCATTTACATGAGAAGGGTAGCAGTGTGTTGAATTCGTGGAAAATGAGGATAAAAATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTGCATAAGTTTGGAGTTCCATCTCCTGTTCATGGAGATATCAACCCTTCCAACATTCTTCTTGATGCTACTTGGACAGCAAAGGTATCTAACATTGGGAAGGCAGCAGGAACGTTTGGATACATTGATCCTGAGTACATTGATCTGAATGTGTTGACAACAAAGAGTGATGTGTATGGATTTGGAGTTGTACTGCTTGAACTTTTAACAGGAAAAAATGGAGGCACCATATTACATGTACCCTCTGCAGAGGTTAGTATTTTGGGTGGAGATTTTGTGAAAAATTTGGATAAAAGGGTTGGAGAACCCCGTCTCAATGAAGCCAAGGCACTGAAGTTAGTGGCCCGTACTGCCATCAATTGTGTAAATGTGGAAGGAAAGGTTAGACCAACCAGTGCTCAGGTTGTGTTCAATTTGGAGAGGGCTTTTGCTTATTTCCGGCGGCGGTACTAG 1236 0.4409 MANSGASLVHSFASIVEYAIRSIGGDLGAFPLRDFSFAVENAWSSIGGDLGAVPVRGFASIVENMMRSVGGDLRALPVHGFASAVENAMISIGGDLGVSPMQGFASRVENAMSSIGGDLGTSHSPVHGFQVFTLLELAAATNNFSVDNKIRAGSSSVVYRGKLVDGSEVTIERVERWSSRTVEEAFWWRRTSSLKILPGLRPKNLVGLVGLCEEKNERVLVYEGMKNGSLYDHLHEKGSSVLNSWKMRIKIALDASRGIEYLHKFGVPSPVHGDINPSNILLDATWTAKVSNIGKAAGTFGYIDPEYIDLNVLTTKSDVYGFGVVLLELLTGKNGGTILHVPSAEVSILGGDFVKNLDKRVGEPRLNEAKALKLVARTAINCVNVEGKVRPTSAQVVFNLERAFAYFRRRY* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2519 411 Gene3D Phosphorylase Kinase; domain 1 119 223 - -
Pvu1g2519 411 SUPERFAMILY Protein kinase-like (PK-like) 119 403 IPR011009 -
Pvu1g2519 411 Gene3D Transferase(Phosphotransferase) domain 1 225 406 - -
Pvu1g2519 411 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 44 405 IPR044815 GO:0004674
Pvu1g2519 411 ProSiteProfiles Protein kinase domain profile. 144 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2519 411 Pfam Protein kinase domain 145 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2519 411 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 44 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2519 Pvu-Chr1 50296080 50297315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2519 132 404 Receptor kinase-like Gene Family AT3G55950 52.063 7.35e-79 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pvu1g2519 Pkinase 3.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2519 - - pvu:PHAVU_001G243700g 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2519 1 50296080 50297315 Pvu8g2316 8 53741844 53744583 PCT