Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2516 ATGAGGCAGAGTCCCCATCAGATATCAGACATCGCTGCCAACATGACATCAGCCTGGACTCGTCCCCACTCTCACCCATCCCCGTCACCGCCAACTCTACTCTCCGACTCTGATTCCGACGCAGACGGCTCCTCCGCATCGGAGATCCACCGCCACTCCGACCTGTCGGACTCCATATTCAAGCCTTACCTCGAATTTTCCGGCCACTCAGGCGCCGACCTTTCGAAGATCCAATCATTCCTGACGTCCTCCTCCGCCGGTGCTCTCTCGTGCCTCATCTGCCTCGAACGCATCAAACCCTCCGACCCCACTTGGTCATGCTCCTCCCTCTGCTATGCCGTCTTCCACCTCATCTGCATCCAGAGCTGGGCCCGCCAGGCCTCGGACCTTGCCGCCGCACGCGCTGCCACTCGCCTCCCTATCTCTCCCGCCACAGCCTCCGACACCGCCCTCTGGAACTGCCCCAAATGCAGATCGGAGTACCCCAAATCTCACATTCCCAAAACGTATCTCTGCTTCTGCGGGAAGGTGGATAATCCTCCCAACGATCCGTGGGTTTTGCCACACTCTTGCGGTGAGGTTTGCGGAAGACCGTTGAAGCACAATTGCGGGCACCATTGTTTGTTACTCTGCCATCCCGGGCCGTGCCCCTCTTGCCCCAAACTCGTTAAAGTTCGATGCTTTTGTGGGTGCATTGAAGATGTTCGACGATGTGGATTCAAGGAATTTTCATGTAATAATCCGTGTTCCAAGGTTTTGGATTGTGGGGTTCACCGTTGCGCTGAGGTTTGCCACCGTGGCGCTTGCCCTCCTTGCCGGACACGTGGCGTGTATGCCTGCCAGTGTGGGAGGGTGAAAGAGGAGAAGGAGTGTTGTGATCGTGTTTTTCAGTGTGATCATCCGTGTGAGAAGAGGCTTGGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGTCATCCTGGTGAGTGTGGTGAGTGTCCCCTTAAGGGGAAGAGAACGTGCCCTTGTGGGAAAAGGGTTTATGAAGGAATTCCTTGTGATGCTTCTGTGCAGCTTTGTGGGGCTACCTGTGATAAGATGTTGCCCTGTGGCTACCACAGGTGCCCAGAGCGGTGCCATCGTGGACAGTGCGTTGAGACTTGTAGGGTTGTTGTGAAGAAGTCCTGTCGATGCGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAGGATGCGTGACTGTGGTCGGCATGCTTGCAAACGGCGCTGCTGTGATGGGGATTGCCCTCCCTGCTCAGAGATATGCGGAAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGAGGTCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCATGTGCGTGTGGAGAGACACGATTTGAGGTTCCTTGTGGTATCGAAATGGACCAAAAGCCTCCTAGATGTCCCAAACCATGTCCTATCACTCCTTTATGTCGGCATGCATCAAATTGCAAGCCACATAAATGCCATTATGGAGCTTGCCATCCTTGTCGGCTACCTTGTGCCAAAGAGTACCAATGTGGTCATACATGCAAATTAAGGTGTCATGGTGCTAAGCCTCCTCCTAATCAAGAGTTTACTCTGAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAGGTGTTCCTGGCACTCCATGCCCTCCTTGCCCAGAACTTGAGTGGAGATCATGTGTTGGGAAACACATTGGAGCTGACAGAATGATGGTTTGCTCTGATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGGCAATCATTATTGTACAAAAACCTGCCATGCCTTGGAGAACCAGTTACGAGAAAGTGAACCATGTGAAGATTGTTATCTTCCTTGTCAACAGGAACGAGAGCCTGCATGTCCGCATAGTTGCCCTCGGCGATGCCATCCTGGAGACTGTCCTCCATGCAAGGTACTCATTAAGCGGTCATGTCACTGTGGTGCAATGGTTCATGTGTTTGAGTGTCTATATTACAATAGCTTGTCCGCAAAGGGTCAAGAGACTGTCCGTTCATGTGGTGGGCCATGTCACAGAAAGTTGCCAAATTGTACGCATCTATGCCCAGAGACATGTCATCCTGGTCAATGCACAAATGCTGAGAAATGCTGTAAAAAGGTCACAGTTCGATGCAAATGCCAAACACTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCAGCATATCATCATATGGGTTGCCATCCAAAGGATACACCAAAAAATCAATTTGGAATTGGACTAATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTACGTAAATCTAGGGTTACTGAGGTACAAGAACAAGATACAGAAAAATCTGCTCGAAAGCGAAGAAAAAGGAGGGAACGGGTTCTTGAATCCAAGGAAACATCAAAACTACAGAAAATAATTTCCGGAGCAAAGCGGCTTCTTCTTTTTGTCTTTATTTTGATCATACTTGTTGCTGCTACATATTATGGGTACAAGGGACTTTTGTGGCTCTCTGATTGGATGAATGAAGTGGATGAACGAAGACAAAGATATTCTGGAATCAAATGA 2649 0.4923 MRQSPHQISDIAANMTSAWTRPHSHPSPSPPTLLSDSDSDADGSSASEIHRHSDLSDSIFKPYLEFSGHSGADLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCYAVFHLICIQSWARQASDLAAARAATRLPISPATASDTALWNCPKCRSEYPKSHIPKTYLCFCGKVDNPPNDPWVLPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGCIEDVRRCGFKEFSCNNPCSKVLDCGVHRCAEVCHRGACPPCRTRGVYACQCGRVKEEKECCDRVFQCDHPCEKRLGCGKHVCERGCHPGECGECPLKGKRTCPCGKRVYEGIPCDASVQLCGATCDKMLPCGYHRCPERCHRGQCVETCRVVVKKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETRFEVPCGIEMDQKPPRCPKPCPITPLCRHASNCKPHKCHYGACHPCRLPCAKEYQCGHTCKLRCHGAKPPPNQEFTLKPKKKKIIQQSEGVPGTPCPPCPELEWRSCVGKHIGADRMMVCSDKSQFSCENLCGNPLPCGNHYCTKTCHALENQLRESEPCEDCYLPCQQEREPACPHSCPRRCHPGDCPPCKVLIKRSCHCGAMVHVFECLYYNSLSAKGQETVRSCGGPCHRKLPNCTHLCPETCHPGQCTNAEKCCKKVTVRCKCQTLKKEWVCQDVQAAYHHMGCHPKDTPKNQFGIGLIPCNSDCKSKVQVVESELQLRKSRVTEVQEQDTEKSARKRRKRRERVLESKETSKLQKIISGAKRLLLFVFILIILVAATYYGYKGLLWLSDWMNEVDERRQRYSGIK* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2516 882 Pfam NF-X1 type zinc finger 528 537 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 436 460 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 308 326 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 203 220 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 255 273 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 415 433 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 362 381 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 649 664 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 Pfam NF-X1 type zinc finger 610 620 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 CDD NF-X1-zinc-finger 191 239 - -
Pvu1g2516 882 SMART znfxneu3 442 461 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 362 382 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 710 732 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 415 434 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 610 641 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 203 221 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 528 573 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 647 665 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 505 520 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 255 274 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 SMART znfxneu3 308 327 IPR000967 GO:0005634|GO:0008270
Pvu1g2516 882 CDD NF-X1-zinc-finger 352 401 - -
Pvu1g2516 882 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g2516 882 CDD NF-X1-zinc-finger 298 345 - -
Pvu1g2516 882 MobiDBLite consensus disorder prediction 1 50 - -
Pvu1g2516 882 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 35 879 - -
Pvu1g2516 882 CDD NF-X1-zinc-finger 245 293 - -
Pvu1g2516 882 CDD NF-X1-zinc-finger 432 479 - -
Pvu1g2516 882 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 35 879 IPR034078 GO:0003700
Pvu1g2516 882 CDD NF-X1-zinc-finger 405 453 - -
Pvu1g2516 882 SUPERFAMILY RING/U-box 90 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2516 Pvu-Chr1 50281170 50288426 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Pvu1g2516 zf-NF-X1 0.0024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2516 K15683 - gmx:100799540 1686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2516 1 50281170 50288426 Pvu1g2516 1 50281170 50288426 ECH