Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2512 ATGGCTTCCAGAGGAACTGGAACGCTGATTTGGGTGTGTCTGTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAACTCCACTTGGTAGACAACAGAACCAATCAACCTTCCTCTCGCAGTAATCTCATCAAGACTCAACAGCTTTCAGATACCCCTTTGGGACAGGATTCGGAGGGTGTCACTCACAAGGTGTATTTCGATATAGAGATCCATGGGAAATTAGCGGGTCGCATAGTCATCGGCCTTTTTGGAAACACAGTTCCGAAAACTGTAGAAAACTTTCGAGCGCTTTGTACTGGAGAGAAAGGAAAGGGAAGAAGTGGGGAGTCTCTTCATTATAAAGGAAGCACATTCCACAGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGGGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATTCTGGACCAGGATACTTATCTATGGCGAATTCAGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACCACAGTTAAAACGAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTAATTTCTGGTATGGACGTTCTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAAGGTCGTCATATCAGACAGTGGAGAATTAACTTCCTGA 705 0.4525 MASRGTGTLIWVCLLWLFFLCATIAFFQLHLVDNRTNQPSSRSNLIKTQQLSDTPLGQDSEGVTHKVYFDIEIHGKLAGRIVIGLFGNTVPKTVENFRALCTGEKGKGRSGESLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHSGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVISGMDVLYKIEAEGSESGSPKNKVVISDSGELTS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2512 234 CDD cyclophilin_ABH_like 65 230 - -
Pvu1g2512 234 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 69 228 IPR002130 GO:0000413|GO:0003755
Pvu1g2512 234 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 68 231 IPR002130 GO:0000413|GO:0003755
Pvu1g2512 234 SUPERFAMILY Cyclophilin-like 63 232 IPR029000 -
Pvu1g2512 234 MobiDBLite consensus disorder prediction 220 234 - -
Pvu1g2512 234 MobiDBLite consensus disorder prediction 36 58 - -
Pvu1g2512 234 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 116 133 IPR020892 GO:0003755|GO:0006457
Pvu1g2512 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Pvu1g2512 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Pvu1g2512 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 179 IPR002130 GO:0000413|GO:0003755
Pvu1g2512 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 191 IPR002130 GO:0000413|GO:0003755
Pvu1g2512 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 207 IPR002130 GO:0000413|GO:0003755
Pvu1g2512 234 Gene3D - 56 234 IPR029000 -
Pvu1g2512 234 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 44 232 - -
Pvu1g2512 234 MobiDBLite consensus disorder prediction 215 234 - -
Pvu1g2512 234 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 44 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2512 Pvu-Chr1 50255124 50258312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2512 79 226 U-box Gene Family AT5G67530 45.333 5.97e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2512 K01802 - gmx:100792649 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2512 1 50255124 50258312 Pvu1g2512 1 50255124 50258312 ECH