Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2496 ATGGCGGTGAAACTCACGAAAGCGCAGAAGAAGATAGCGTACGATGCGAAGCTGTGTCGACTTCTGGATAACTACACCCAAATTCTGGTGGTGGCTGCGGACAACGTGGGATCCAACCAGCTTCAGAACATCCGACAGGGTCTACGTGGCGACTCCATTGTGCTCATGGGAAAGAACACCATGATGAAACGCTCTGTTAAACTCCATGCTGAGAGCACCGGCAACAATGCCTTCCTCAATCTTGTTCCACTTCTCGTGGGTAATGTGGGGTTGATTTTCACCAAAGGTGACGTGAAGGAGGTTAGTGAAGTGGTGGCTAAATACAAGGTGGGAGCTCCTGCTCGTGTTGGGTTGATTGCACCAATTGATGTTGTAGTTCCTCCAGGCAACACAGGGTTGGATCCATCTCAAACTTCTTTCTTCCAGGTGTTGAACATTCCTACCAAAATTAACAAGGGTACTGTGGAAATTATCACCCCTGTGGAACTCATTAGGAAGGGTGAGAAGGTGGGGTCTTCTGAGGCTGCACTGCTTTCGAAGCTTGCGATAAGGCCCTTCTCTTATGGCCTTGTTGTGGTTTCTGTCTATGACAACGGTTCGGTGTTTAGCCCTGCGGTTCTTAACCTCACTGATGATGACCTGGTTAATATGTTTGCTAATGGTGTTTCCATGGTTTCTTCACTGTCGTTGGCTATCTCCTACCCAACAATTGCAGCTGCACTACACATGTTCGCCAATTCCTATAAGAACGTCCTCGCTGTCGCAGTCGTAACAGAATATTCCTTCCCCGAGGCTGACGAGGTTAAGGAGTTCTTGAAGGATCCTAGTAAATTTGCAGTAGCTGTTGTTGCCGCAACTGCTACTGATTCTGCTCCAGCGGCTGCTAAGGAGGAGGAAAAGAAGGAAGAACCAGAAGAATCTGATGATGACATGGGCTTCAGTTTGTTTGATTAA 954 0.478 MAVKLTKAQKKIAYDAKLCRLLDNYTQILVVAADNVGSNQLQNIRQGLRGDSIVLMGKNTMMKRSVKLHAESTGNNAFLNLVPLLVGNVGLIFTKGDVKEVSEVVAKYKVGAPARVGLIAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLSKLAIRPFSYGLVVVSVYDNGSVFSPAVLNLTDDDLVNMFANGVSMVSSLSLAISYPTIAAALHMFANSYKNVLAVAVVTEYSFPEADEVKEFLKDPSKFAVAVVAATATDSAPAAAKEEEKKEEPEESDDDMGFSLFD* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2496 317 MobiDBLite consensus disorder prediction 289 317 - -
Pvu1g2496 317 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Pvu1g2496 317 Gene3D - 6 209 IPR043141 -
Pvu1g2496 317 Pfam 60s Acidic ribosomal protein 234 316 - -
Pvu1g2496 317 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 317 - -
Pvu1g2496 317 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Pvu1g2496 317 CDD Ribosomal_P0_L10e 9 185 - -
Pvu1g2496 317 PIRSF L10E 1 317 IPR030670 GO:0042254
Pvu1g2496 317 Pfam Ribosomal protein L10 8 108 IPR001790 -
Pvu1g2496 317 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 317 - -
Pvu1g2496 317 MobiDBLite consensus disorder prediction 302 317 - -
Pvu1g2496 317 Gene3D - 114 185 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2496 Pvu-Chr1 50114834 50116538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2496 1 316 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 78.797 8.23e-180 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2496 K02941 - gmx:100791968 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2496 1 50114834 50116538 Pvu1g2496 1 50114834 50116538 ECH