Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2489 ATGCTGTGTTCTCTTTTCAAGGGAAGCAAGTGGTGCATGGTAACAATGTCTTCTTCTTCTTCTTCTTGTGATGATGCAATTACTGTCCTCTCAAAATGCACTGTTGTGCCTCACCAAACTTCCACTCTAGGAGATCTCAAGCTCTCTATCTCAGACCTTAACATGCTCCTCTCTCACTACATTCAGAAGGGGTGTCTCTTCACCACCCCATCTCTCCCCTCTCACACTCTCATCCCTCACCTCATCAACGCGCTTTCTCGCACGCTCTCCTTTTTCCCTCCCTTCGCCGGTCGTCTCAAAAGTCACCATCATGGCTACGTCTACATCGCATGCAACGATGAAGGCGTCGACTTCATCCACGCCACCGCTCTTCATATCTCCGTTGCCGACCTCCTGTCACCGTCCCATCCTCATCCAACCTTCAACCACCTCTTTCCTTTCCACCACAAAATCAGTTACACCGCTCATTCCTCCCCTATCATGGCCTTTCAGGTCACCGAGCTCTCTGACGGCGTTTTCATCGGTTGCGCCGTTTGCCACGCCGTCACCGACGGCGCCTCCTTCTGGAACTTCTTTAACACCTTCGCTGCAGTTTCTCAAGGAGCAACCGTATGTCCCTCCAGGCTCCCGGATTTTCGTCGGGATTCCATCCTCACCTCCAAGATTCTGCTTCGGCTGCCAAAAGAAATCAAGGTGACCTTCGACGTTGACGCACCCTTTCGCGAGAGAATCTTCAGCTTCAGCCGTGAATCAATTCAGAAGCTGAAAGCCGTGGCGAATAATGGTGGGAAAGTTTGTTTGTCGGAGAATGTTGAGTTGATGGGGAAGCTGAGCCACGATACACAGGTGAAACCGGTTACTAGAGGCATAACTAACGAAACGACAGAGATTTCGTCGTTTCAATCTTTGTGTGCGCTGATGTGGCGGTCGGTTACAAAGGCGAGGAATCTGGAAGGGCCTCAGGTGACGACGTTTCGAATGGCAGTTAATGTTCGGCAACGCATGGAGCCGAAGTTGGGAGATTATTACTTTGGAAATGCGATTCAAAGCATTGCCGCGTGTGCAGCAGCAGGTGACGTGGTATCCAGCGATCTCCGATGGTGCGCGGAACTACTGAACAAAAGTGTGAAGGCGTTCGACAGCGATACAGTGCGCCGCAATGTGGAGAATTGGGAGCGTGAGCCAAAGTGTTTTGAGTTGGGAAACCACGACGGCGCCACCTTGCAGATGGGAAGCTCACCCAGATTTCCGATGTATGAAAATGATTTTGGATGGGGGCGGCCCTTGGCTGTACGGAGCGGCGGAGCCAACAAGTTTGATGGCAAAATGTCGGCGTTTCCCGGGAGGAATGGCGGCGGTAGCGTTGATTTGGAAGTGGTTTTGGCGCCTGACACAATGGACCAACTTCACTCTGATCCCGAGTTCATGTTTTATGTGTCCGGTTAG 1446 0.5166 MLCSLFKGSKWCMVTMSSSSSSCDDAITVLSKCTVVPHQTSTLGDLKLSISDLNMLLSHYIQKGCLFTTPSLPSHTLIPHLINALSRTLSFFPPFAGRLKSHHHGYVYIACNDEGVDFIHATALHISVADLLSPSHPHPTFNHLFPFHHKISYTAHSSPIMAFQVTELSDGVFIGCAVCHAVTDGASFWNFFNTFAAVSQGATVCPSRLPDFRRDSILTSKILLRLPKEIKVTFDVDAPFRERIFSFSRESIQKLKAVANNGGKVCLSENVELMGKLSHDTQVKPVTRGITNETTEISSFQSLCALMWRSVTKARNLEGPQVTTFRMAVNVRQRMEPKLGDYYFGNAIQSIAACAAAGDVVSSDLRWCAELLNKSVKAFDSDTVRRNVENWEREPKCFELGNHDGATLQMGSSPRFPMYENDFGWGRPLAVRSGGANKFDGKMSAFPGRNGGGSVDLEVVLAPDTMDQLHSDPEFMFYVSG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2489 481 Pfam Transferase family 27 476 - -
Pvu1g2489 481 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 23 480 - -
Pvu1g2489 481 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 23 480 - -
Pvu1g2489 481 Gene3D - 27 232 IPR023213 -
Pvu1g2489 481 Gene3D - 240 473 IPR023213 -
Pvu1g2489 481 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2489 Pvu-Chr1 50064134 50066017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2489 51 479 Monolignol Biosynthesis Gene Families AT5G48930 26.444 8.67e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2489 - - vra:106757796 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2489 1 50064134 50066017 Pvu8g2339 8 53934137 53935591 PCT