Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2485 ATGGAATTGGAGACCCCATATCCAAGTTGTTTTATGTCAAATTCAAATTGGTTTGTTCAAGAGAGTGACTACACAGAATGGACGACAGAAGAGAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGACAGATGGCTGAGAGTTGCAGCCATGCTCCCAGGAAAAAGTGTCTATGATGTGATGAAACAGTACAGGGAATTGGAAGAAGATGTTAGTGAAATAGAAGCAGGGAGGATTCCAGTTCCTGGATATCTTACCTCTTGCTTCTCATTGGAGATGGTTGACAACCAATGTTATGATGCATGCAGAAAGAAGCCTGCAACTGTCAGGAGTTCTGATCAGGAGAGGAAGAAAGGGATCCCTTGGACTGAAGAGGAACACAGACGTTTTTTGATGGGACTTTTGAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGCAAATTTGTGGTGACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTGTGGAGGGAAAGACAATAAGAGGAGGCCTAGTATCCATGATATCACCATTATTAATCTTACATCAGACCAAGAGAAGTTCAATGAATCACACATGCCCTCAGAGAAACTGAAGCTGAATAGCATGACAAAACTACAACTTGAATGGATTAATCGCCGCAACAATACTGCTTCACTTATGGTTTTCAACCCAAATTATGATATGTTGATGTCACCTTCATCTGGCACCCTATCTCCCAAGACCCTCAAGTTAGGTCAGGATTTCTATGAATGTGCTTTCCATGACACTTATGCCAAGCTTAAAAATCCAGCTTTCAGGACAGCTTCTAGAGACTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 900 0.4133 MELETPYPSCFMSNSNWFVQESDYTEWTTEENKKFESALAIYDKDTPDRWLRVAAMLPGKSVYDVMKQYRELEEDVSEIEAGRIPVPGYLTSCFSLEMVDNQCYDACRKKPATVRSSDQERKKGIPWTEEEHRRFLMGLLKYGKGDWRNISRKFVVTKTPTQVASHAQKYYIRQKLCGGKDNKRRPSIHDITIINLTSDQEKFNESHMPSEKLKLNSMTKLQLEWINRRNNTASLMVFNPNYDMLMSPSSGTLSPKTLKLGQDFYECAFHDTYAKLKNPAFRTASRDFNKEAIFGIHAL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2485 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 281 IPR043363 -
Pvu1g2485 299 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Pvu1g2485 299 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Pvu1g2485 299 CDD SANT 126 170 IPR001005 -
Pvu1g2485 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 281 - -
Pvu1g2485 299 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Pvu1g2485 299 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Pvu1g2485 299 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Pvu1g2485 299 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Pvu1g2485 299 SMART sant 123 173 IPR001005 -
Pvu1g2485 299 SMART sant 23 75 IPR001005 -
Pvu1g2485 299 CDD SANT 26 72 IPR001005 -
Pvu1g2485 299 Gene3D - 125 176 - -
Pvu1g2485 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Pvu1g2485 299 Gene3D - 19 86 - -
Pvu1g2485 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 175 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2485 Pvu-Chr1 50018716 50021153 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g2485 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2485 - - gmx:100783469 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2485 1 50018716 50021153 Pvu8g2344 8 54023111 54025282 ECH
Pvu1g2485 1 50018716 50021153 Pvu1g2485 1 50018716 50021153 ECH
Pvu8g1104 8 12313062 12315285 Pvu1g2485 1 50018716 50021153 ECH
Pvu1g2485 1 50018716 50021153 Pvu8g1104 8 12313062 12315285 ECH
Pvu1g2485 1 50018716 50021153 Pvu8g2344 8 54023111 54025282 PCT