Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2479 ATGTCTTTTATCGGAACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACGGTTTATCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCTTGCTTCAGGTGCTCCCACTGCAAAGGAACATTAAAGCTGAGCAACTATTCCTCAATGGAAGGTGTTCTTTATTGTAAACCTCACTATGAGCAGCTCTTCAAGGAGACTGGCACCTTCAGCAAGAACTTCCAGTCACCTGCAAAGTTAGCTGATAAGACTACTCCTGAGCTGACAAGGTCACCTAGTAAAGCTGCGAGCATGTTTTCTGGCACACAAGAAAAGTGTGCTACATGTGGGAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGTTGTCCCATAACCCCATCTAATTATGCAGCCCTTGAGGGCATTCTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTCACAAAATCTGCATCAATCAAACGGGCGGCGGCGGCAGCAGCAGCAGCCACTGTTCCAGAATCTTGA 585 0.4598 MSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFSKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLTKSASIKRAAAAAAAATVPES* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2479 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Pvu1g2479 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pvu1g2479 194 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Pvu1g2479 194 SMART lim_4 9 61 IPR001781 -
Pvu1g2479 194 SMART lim_4 107 159 IPR001781 -
Pvu1g2479 194 CDD LIM2_SF3 108 168 - -
Pvu1g2479 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pvu1g2479 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Pvu1g2479 194 Pfam LIM domain 10 65 IPR001781 -
Pvu1g2479 194 Pfam LIM domain 108 163 IPR001781 -
Pvu1g2479 194 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pvu1g2479 194 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pvu1g2479 194 PANTHER OS06G0237300 PROTEIN 1 187 IPR045268 GO:0051015
Pvu1g2479 194 CDD LIM1_SF3 6 68 - -
Pvu1g2479 194 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 187 - -
Pvu1g2479 194 Gene3D Cysteine Rich Protein 102 172 - -
Pvu1g2479 194 Gene3D Cysteine Rich Protein 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2479 Pvu-Chr1 49987707 49990679 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pvu1g2479 LIM 3.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2479 K09377 - gmx:100809121 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2479 1 49987707 49990679 Pvu1g2479 1 49987707 49990679 ECH