Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2451 ATGGCTCCTCCCTCAGATATCAACCATCTTTCTCACCCTTGCATATACGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCCAATAGAGGAAGGGGTGGTGGTCGTCATCTACAGCAGCCTGAAGAGGAAAACATGGCTTGGCCAGCTCCAGCTAGATCAATGGATGACCGTGCTAGATCTCGGAAAGAGAAAGAAGAGTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTGAAGAGACCAACGGGGTATAAATGGCGAACAGGAGCAAGAATTGATGAAGACTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCTCATCCTCCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGTATGGAATCGCACAGCAGAATATGTGGAGGGTGCAACCAAGAGATCTATGGCGATTGTTTGGGAGTCGGTCATAGTTATTTTCATCCAGACTGCTTCCAGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCATAAGTCCTGTTTTAAAGAATTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCTTATTGGAACCAAAAGTATTGCCCATCTCATGAATATGATAATACATCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGGAATGAAAGATACTGTAGATTAGAAGATGGAAGGATTTTATGCTTTGAGTGCATGGAATCTGCTATAATTGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAATATGAGAATAGATCAGCAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGATTCCATCACCTACCAGAAACTAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCTAAGACGGCCAAGAATTGGTGGTCATAGATTAATAGGGATGAGATCTCAACCTCAAAAGCTGCTTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTGTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGTTGGTTACGCCTGAAAGGTTACCAAAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTCTCTTACATGTGGCTTGAGTCAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCATCAGCTTCTTCTTCCTCCTCCTCATCCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACGTAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTCAGAGCGGCTAATGGAGCTGTGAATAAATATGGTTTACGTTGCACTCTGGAACATATTCGTTTGACTGGTAATTTCCCAGTTTGA 1536 0.431 MAPPSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSNRGRGGGRHLQQPEEENMAWPAPARSMDDRARSRKEKEELDHAIALSLGENLKRPTGYKWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGMESHSRICGGCNQEIYGDCLGVGHSYFHPDCFQCHSCRYPITEREFSLSGKHPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEYDNTSRCCSCERLESRNERYCRLEDGRILCFECMESAIIDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVLRRPRIGGHRLIGMRSQPQKLLRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYQNLSPEVEEGICQVLSYMWLESEVMSCARTMPSTSSASSSSSSSSHSSKKGAKSHVERKLGEFFMNQIANDSSPAYGGGFRAANGAVNKYGLRCTLEHIRLTGNFPV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2451 511 SMART lim_4 146 197 IPR001781 -
Pvu1g2451 511 Pfam Protein DA1 295 506 IPR022087 -
Pvu1g2451 511 CDD LIM_DA1 147 198 - -
Pvu1g2451 511 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 511 - -
Pvu1g2451 511 MobiDBLite consensus disorder prediction 44 80 - -
Pvu1g2451 511 Gene3D Cysteine Rich Protein 141 204 - -
Pvu1g2451 511 ProSiteProfiles LIM domain profile. 145 204 IPR001781 -
Pvu1g2451 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 237 - -
Pvu1g2451 511 MobiDBLite consensus disorder prediction 435 453 - -
Pvu1g2451 511 Pfam LIM domain 147 199 IPR001781 -
Pvu1g2451 511 MobiDBLite consensus disorder prediction 435 456 - -
Pvu1g2451 511 PANTHER PROTEIN DA1-RELATED 2 20 511 IPR045218 -
Pvu1g2451 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 171 - -
Pvu1g2451 511 ProSitePatterns LIM zinc-binding domain signature. 147 180 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2451 Pvu-Chr1 49738889 49744752 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu1g2451 DA1-like 1.1e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2451 - - gmx:100798829 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2451 1 49738889 49744752 Pvu1g2451 1 49738889 49744752 ECH
Pvu1g2451 1 49738889 49744752 Pvu8g2377 8 54461684 54466341 PCT