Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2446 ATGGAGTTCACCACGAGGCACTTTCTCATGGCAATTCTGCTGCTGATGCTATCACGCGCCCCACAAGGGTCCCCTGCCACGCCGTGCCCCGCGTGCGGCAACACCACGGTGCCGTTTCCCCTCAGCACCACCTCGACATGCGGCGACCAGTCGTACAAAATCCGGTGCAGCTCCGGCACACTCATATTCGACACGTTGAACAACTCGTACCCGATCGAGTCCATCGACGCCAAATCGCAGCGCCTTGTGATCCAGCCCGCGGCGCTCGTGCAGAACACGTGCGTCTCTACCGATAAGGTACACCAGGGGATCCAGCTCAACAGCACCCTCCCCTTCAATATCACCAGTTCCAACACCATCGTCTACCTCAACTGCACCCTCACGCTCCTCCAGTCCCCCCTCAACTGCTCCGCCGCCAGCGCCTGCCACGCCTACATCAACGCCACCGCCTCCGCCGCCTCCTGCCAGAGCGGCCCCCTCTGCTGCACCTACCGCACCGGCGGCTCCAGCAACTCCTATATGATTCGCGTTAGAGACTCTGGCTGCAGCGCCTACTCCAGCTTCGTTAACCTCAACTCGGCTCAACCTGTGAGCCGCTGGCCCGAACCGGGTTTGGAGATTCAGTGGCTCTCGCCTAGAGAAACCGTCTGTGGGTCCCAGGAGGATTGCGACTCTGCCACGTCGACTTGTGGGCCCGACGCCTCCTCTACGATCGGGATCAAGAGGTGCTTCTGTCACGATGGGCTCGTGTGGGACCCCATCCAAGGGGTGTGCTCTAAAAAAATTACTTGCCAGAACCCTGATGGTTGTGGGGACTCCACTAAAAAAAAGGCCATAATAGCAGGTTCAGTATGTGGGGCTGGAGCTGCAATCATCCTTGCCATCATTGCCTTTCTACTCTACAAACGCAACAAGCGCATTAAAGAAGCACAAGCACGGCTAGCCAAAGAGCGTGAAGGAATTCTGAATGCCAGTAATGGGGGAAGAGCGGCTAAACTTTTCAGTGGCAAAGAGATAAAGAAAGCCACAAACGACTTCTCCAATGACCGACTTCTTGGTGTTGGAGGCTATGGTGAAGTTTACAAGGGCTTTCTTCAAGATGGTACTCCTGTGGCTGTCAAGTGTGCTAAGCTTGGCAACGCCAAAGGCATTGATCAAGTGCTCAATGAGGTTCGCATATTATGCCAAGTTAACCACCGAAACCTTGTTGGTCTACTTGGTTGCTGCGTGGAACTGGAGCAGCCTATTTTGGTTTATGAGTTCATAGAAAATGGTACCCTTCTTGATCACTTGCAAGGTCAAATTCCTAAGGGCCGTGGTTTGCTTAGTTGGACACATCGCCTTCAAATTGCACGTCACACTGCTGAGGGTCTTGCTTACCTTCACTTCATGGCTGTGCCTCCTGTCTACCACAGAGATGTCAAGTCCAGCAATATTCTCCTAGATATCAATATGTATGCCAAGGTTTCAGATTTTGGGTTGTCTAGGTTGGCTCAGACAGATATGAGTCATATCTCCACTTGTGCTCAGGGGACTCTTGGTTACCTTGATCCTGAGTATTATAGGAACTACCAATTGACTGATAAGAGTGATGTTTACAGTTTTGGAGTGGTGCTTCTTGAGCTTTTGACAGCTCAGAAGGCAATAGATTTTAACAGGGCACCAGATGATGTGAACTTGGCAGTTTATGTGCATAGAATGGTGGAGGAGGAACTGTTGGTGGATGTCATTGATCCAGTGTTGAAGAATGTAGCCACCACTATAGAGCTAGAGACTATGAAAGCAGTGGCATTTCTGGCATTGGGCTGCTTAGAGGAAAAGAGACAGAATCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTACATCATTAGTATTGCCTCAGCAAAGGTAGTGGAGTAG 1905 0.516 MEFTTRHFLMAILLLMLSRAPQGSPATPCPACGNTTVPFPLSTTSTCGDQSYKIRCSSGTLIFDTLNNSYPIESIDAKSQRLVIQPAALVQNTCVSTDKVHQGIQLNSTLPFNITSSNTIVYLNCTLTLLQSPLNCSAASACHAYINATASAASCQSGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLNSAQPVSRWPEPGLEIQWLSPRETVCGSQEDCDSATSTCGPDASSTIGIKRCFCHDGLVWDPIQGVCSKKITCQNPDGCGDSTKKKAIIAGSVCGAGAAIILAIIAFLLYKRNKRIKEAQARLAKEREGILNASNGGRAAKLFSGKEIKKATNDFSNDRLLGVGGYGEVYKGFLQDGTPVAVKCAKLGNAKGIDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLLDHLQGQIPKGRGLLSWTHRLQIARHTAEGLAYLHFMAVPPVYHRDVKSSNILLDINMYAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRAPDDVNLAVYVHRMVEEELLVDVIDPVLKNVATTIELETMKAVAFLALGCLEEKRQNRPSMKEVAEEIEYIISIASAKVVE* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2446 634 Gene3D Phosphorylase Kinase; domain 1 307 421 - -
Pvu1g2446 634 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Pvu1g2446 634 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Pvu1g2446 634 CDD STKc_IRAK 352 622 - -
Pvu1g2446 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Pvu1g2446 634 SUPERFAMILY Protein kinase-like (PK-like) 330 621 IPR011009 -
Pvu1g2446 634 SMART serkin_6 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2446 634 Pfam Wall-associated receptor kinase galacturonan-binding 29 84 IPR025287 GO:0030247
Pvu1g2446 634 Pfam Protein tyrosine and serine/threonine kinase 349 620 IPR001245 GO:0004672|GO:0006468
Pvu1g2446 634 PANTHER OS05G0318100 PROTEIN 23 630 - -
Pvu1g2446 634 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 630 IPR045274 GO:0007166
Pvu1g2446 634 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2446 Pvu-Chr1 49698036 49701035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2446 18 634 Receptor kinase-like Gene Family AT5G02070 52.848 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pvu1g2446 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2446 - - gmx:100305415 1113.21