Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2444 ATGGCGGAATTGGAGGAGGACCGGATGGGGGATTTCAAGCCCTTCTCGGAGGGCTCTTCGTGCTCACGTTCGATCAGCGAAACGGTGAATGGCTCTCACCAATTCACGATAAAGGGGTACTCTCTCGCAAAGGGGATGGGTGCTGGGAAGTACATCATGAGCGACAGTTTTAGCGTTGGTGGTTACGATTGGGCAATTTACTTCTACCCTGATGGGAAGAACCCCGAGGACAATTCCATGTACGTTTCGGTCTTCATAGCTCTCGCTAGCGACGGAACCGATGTTAGGGCTCTGTTCAAGTTGACGCTGGTGGATCAGAGTGAGAAGGGAAACGATAAGGTCCATAGCCATTTCGATAGGCCTCTTGACGGTGGACCGTACACCTTGAAGTATAGAGGCAGCATGTGGGGTTACAAGCGTTTCTTCAGAAGAAATTTACTTGAATCTTCAGAGTATCTAAAAGACGATTGCCTTGTCATGCATTGCACTGTTGGTGTTGTCAAAACTCGTTTTGAGGGATCTAAACAAGGTGTTACTGTGCCACAGTCAGACATGGGCCGAAATTTTAAGGACTTGCTGGACTCAGAGGTTGGTTGCGACATAGTTTTCAAGGTTAAAAGCGAAAGCTTCAAAGCTCATAAGTTAATACTTGCGGCCCGATCTCCTGTGTTTAGAGCACAGTTTTTTGGACTTGTTGGGGATCCTAGCTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCTTTTATCTTCAAGGCAATGCTTCTCTTCATTTATTCTGACAAACTTCCAGACATCTATGAAGTTATGGACTCAATGAATGTCTGCTCATATGCCGTCATGGTGCAGCATCTCTTGGCTGCTGCTGATCTCTATAATCTTGACCGGCTCAAACTGCTTTGTGAATCAAAATTGTGTGAAGAAATCAATACTGACAATGTAGCCACGACACTTGCCCTGGCAGAGCAACACAACTGTCCACAGCTTAAGGCAATCTGTTTAAAATTTATTGCCAATCCAGCAAATTTGGGAGCTGTAATGCAGTCGGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCGCAATGTTGTTGGAGCTGCTGGAGACATTTGCCTCAGTGGACGATAACTCAAGCCTGACATTGAGCAGAAAGAGAAGTGGCAGTAGCATATATGCTCAAGATTTGGCAGACGGGGCAGCTACTGAATCAGTTAATCCAAATGGCAGGATTTGGAGTGAAGGTTCCGTTCCAGACTTGAATCACCGGGTTTATGTTTATGTCTGCTCGGTCTATGATTCAATCTGGTAG 1305 0.4598 MAELEEDRMGDFKPFSEGSSCSRSISETVNGSHQFTIKGYSLAKGMGAGKYIMSDSFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDRPLDGGPYTLKYRGSMWGYKRFFRRNLLESSEYLKDDCLVMHCTVGVVKTRFEGSKQGVTVPQSDMGRNFKDLLDSEVGCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPSLEEVVVEDIEPFIFKAMLLFIYSDKLPDIYEVMDSMNVCSYAVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDNVATTLALAEQHNCPQLKAICLKFIANPANLGAVMQSEAFVHLKESCPAMLLELLETFASVDDNSSLTLSRKRSGSSIYAQDLADGAATESVNPNGRIWSEGSVPDLNHRVYVYVCSVYDSIW* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2444 434 SUPERFAMILY POZ domain 178 306 IPR011333 -
Pvu1g2444 434 ProSiteProfiles BTB domain profile. 199 262 IPR000210 GO:0005515
Pvu1g2444 434 MobiDBLite consensus disorder prediction 1 20 - -
Pvu1g2444 434 Pfam BTB/POZ domain 189 306 IPR000210 GO:0005515
Pvu1g2444 434 CDD BTB_POZ_BPM_plant 185 305 - -
Pvu1g2444 434 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Pvu1g2444 434 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 18 379 IPR045005 GO:0016567
Pvu1g2444 434 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 169 IPR008974 GO:0005515
Pvu1g2444 434 SMART math_3 35 147 IPR002083 GO:0005515
Pvu1g2444 434 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 18 379 - -
Pvu1g2444 434 CDD MATH 31 164 IPR002083 GO:0005515
Pvu1g2444 434 CDD BACK_AtBPM-like 305 368 IPR034090 -
Pvu1g2444 434 Gene3D Potassium Channel Kv1.1; Chain A 175 303 IPR011333 -
Pvu1g2444 434 Gene3D - 307 388 - -
Pvu1g2444 434 SUPERFAMILY TRAF domain-like 27 166 - -
Pvu1g2444 434 SMART BTB_4 199 308 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2444 Pvu-Chr1 49676874 49683963 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2073 1 46559997 46564096 Pvu1g2444 1 49676874 49683963 ECH
Pvu1g2444 1 49676874 49683963 Pvu1g2444 1 49676874 49683963 ECH