Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2440 ATGGCTGGGATTTGCTGTAGAGTTGTAGGAGAAGGTGACACCCCTAACCCTCTTGATTCTTCCTCTCGTCCTTCCACCACCCGCAGAGCTATGGACATCGTACCCTTCAACTACATGGCTGACATGACCGTGCCCGAGTCTTCTCGGAAGCGCCCCAAGCTCGATCTCAATGACACTGATGATCAACTTCAAAATGACCAGGAATCCTCCGGAGTCAAGGTTATGAAGAAGGATTCCCAATTCGTCAAGGAGGACGACGAGGATGTTTCCGACACGAAATCGTTGTCGGATGATGACTCCTCCGAAGATGAAGAGTGTCCCAAGTATGGGGTCACCTCTGTCTGCGGCAGGAGGAGAGACATGGAGGATTCCGTTGCCCTGCGCCCTTTCTTCTCGCTGGATGGCTTTCACTACTTTGGCGTTTTTGACGGCCATGGTTGCTCTCATGTTGCCACCATGTGCAAGGAGCGGCTACATGAGATTGTGAACGAAGAGATTCTCGATGAGGACGATAATTTTGAGTGGAAATTGTTGATGCAGAGCGGTTTCGCTCGCATGGACGAAGAGGTTTTCCGCCGGAGCCAGGGCAACCAGACTTTCAACTGCAGGTGCGAGCTCCAGACTCCGCACTGCGACGCTGTTGGATCCACTGCTGTCATCGCCGTCCTCACCCCGGACAAAATTGTCGTCTCCAACTGCGGTGATTCCCGTGCTGTCCTCTGCCGCAACGGAGTTGCCATCCCTCTCTCTTCTGATCACAAATGTTTCGATCCGTTTTCTGTTGTTCAGCCTGACCGCCCCGACGAATTGCTCCGAGTGGAGTCCAAGGGAGGGCGCGTGATTTACTGGGACGGCCCAAGAGTGCTGGGTGTGCTGGCCATGTCTCGAGCCATAGGAGACTACTACCTGAAACCGTTCGTGATTTCGGAGCCCGAGGTGACTGTGACAGAGCGAAGTGATGGAGACGAGTGTTTGATTCTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAACGAAACTGCTTGTGGGGTGGTGAAGATGTGTCTGAAGTCCCAGAAGCCTCCCACTCCGCCGTCTCCTGGCGGTTATGTGACGGCAGATGGTTCCGACCGTGCTTGCTCGGATGCCTCAATTCTGTTGACAAAGCTGGCTTTGGCCAGGCACAGTGCTGATAATGTGAGCGTGGTGGTGATTGATTTGAGGAAGGAGCAAGGAGAAACTTCGGTCCCCACTTCCAACTACGTTAACGAATGA 1254 0.5359 MAGICCRVVGEGDTPNPLDSSSRPSTTRRAMDIVPFNYMADMTVPESSRKRPKLDLNDTDDQLQNDQESSGVKVMKKDSQFVKEDDEDVSDTKSLSDDDSSEDEECPKYGVTSVCGRRRDMEDSVALRPFFSLDGFHYFGVFDGHGCSHVATMCKERLHEIVNEEILDEDDNFEWKLLMQSGFARMDEEVFRRSQGNQTFNCRCELQTPHCDAVGSTAVIAVLTPDKIVVSNCGDSRAVLCRNGVAIPLSSDHKCFDPFSVVQPDRPDELLRVESKGGRVIYWDGPRVLGVLAMSRAIGDYYLKPFVISEPEVTVTERSDGDECLILASDGLWDVVSNETACGVVKMCLKSQKPPTPPSPGGYVTADGSDRACSDASILLTKLALARHSADNVSVVVIDLRKEQGETSVPTSNYVNE* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2440 417 ProSiteProfiles PPM-type phosphatase domain profile. 108 400 IPR001932 -
Pvu1g2440 417 Gene3D - 103 408 IPR036457 -
Pvu1g2440 417 ProSitePatterns PPM-type phosphatase domain signature. 138 146 IPR000222 GO:0043169
Pvu1g2440 417 MobiDBLite consensus disorder prediction 9 108 - -
Pvu1g2440 417 CDD PP2Cc 108 400 IPR001932 -
Pvu1g2440 417 PANTHER PROTEIN PHOSPHATASE 2C 37 38 404 - -
Pvu1g2440 417 MobiDBLite consensus disorder prediction 71 96 - -
Pvu1g2440 417 PANTHER ALPHABET, ISOFORM E-RELATED 38 404 - -
Pvu1g2440 417 Pfam Protein phosphatase 2C 108 392 IPR001932 -
Pvu1g2440 417 SMART PP2C_4 96 398 IPR001932 -
Pvu1g2440 417 SUPERFAMILY PP2C-like 108 401 IPR036457 -
Pvu1g2440 417 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2440 Pvu-Chr1 49644995 49647503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2440 43 402 PP2C-type Phosphatase Gene Family AT2G29380 56.334 4.48e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2440 K14497 - gmx:100776356 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2440 1 49644995 49647503 Pvu8g2391 8 54565786 54567827 ECH
Pvu1g2440 1 49644995 49647503 Pvu1g2440 1 49644995 49647503 ECH
Pvu1g2440 1 49644995 49647503 Pvu8g2391 8 54565786 54567827 PCT