Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2429 ATGGAGGAGTCTCAGTATCTGTTGTGGTTCAAGAGAAAACAAATGTTGAACTCACATATTCAACAACCATTTGGAGCCCGCAACAACAACACCAACTCATCGTGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCCTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTGCATAGGAGGGACAGGGCTAGGCTCAAACAAAGCCTTAGTCACCATAATGAATCCCTTCAAGATCTTCACAAAAATGATTGTCCAGTTGCAACAAGCAAAGTCTCGTCTTCTAGGCCCTCAACTATATCTACTCAAGAAAATTGTTATCATCAGCCTACCATGTCTCCTTACTCTTCTCCAATTAGCTGGGGACATCACCACATGGGGTCCCCTGATTCAGAACCAAAAGGGTCTGCAGTGAATGGAAGGGAACAGTTTTTAAAAGGTTTGGGTTGCAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCAGTGTTTGTCCAAAAGTTACCAATTGAATCATATGGGGACGAAGCTATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGCCTTCCACAAGCCATGTTCAAGTGATAGACACCTAACTTTTCATTCTGCAGAATTTGTACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCGCAGAAAGTTATTTAG 768 0.431 MEESQYLLWFKRKQMLNSHIQQPFGARNNNTNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSHHNESLQDLHKNDCPVATSKVSSSRPSTISTQENCYHQPTMSPYSSPISWGHHHMGSPDSEPKGSAVNGREQFLKGLGCNDYVETSLSVGQSSVFVQKLPIESYGDEAISYKRSKTSMPPLPAFHKPCSSDRHLTFHSAEFVLKPGMEDLDLELRLGKPQKVI* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2429 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Pvu1g2429 255 Gene3D Classic Zinc Finger 55 128 - -
Pvu1g2429 255 Pfam C2H2-type zinc finger 58 82 - -
Pvu1g2429 255 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Pvu1g2429 255 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 255 - -
Pvu1g2429 255 SMART c2h2final6 58 80 IPR013087 -
Pvu1g2429 255 MobiDBLite consensus disorder prediction 108 128 - -
Pvu1g2429 255 PANTHER OS07G0101800 PROTEIN 1 255 - -
Pvu1g2429 255 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2429 Pvu-Chr1 49569068 49570116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2429 27 127 C2H2 Transcription Factor Family AT2G37740 46.491 3.08e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g2429 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2429 - - gmx:102663477 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2429 1 49569068 49570116 Pvu8g2392 8 54586549 54587394 PCT