Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2424 ATGGCCAACCGCTGGTGGGCTGGGAATGTGGGGATGATTAGAGAGCAAGAGTTGATGGAGAACAATAACAACGCGAATACTACTCCGACCAATAGCAGCAACAGCAACACCAACGCCAACACCAACACCACGGAGGAAGAGGTCAGCAGGGACAACGGGGACGACCAGAACCAGAACCTCGGAAGCCACGAAGGTTCGGAGCCCGGAAGCGGCGGTCGGAGGCCACGTGGAAGGCCTCCCGGGTCCAAGAACAAGCCCAAGCCGCCGATTGTCATAACCAAAGAAAGCCCCAACGCGCTCCGAAGCCACGTGTTGGAAATCGCCAGCGGCAGCGACGTCGCGGAGAGCATCGCCGCCTTCGCCAACCGCCGCCACCGAGGCGTGTCGGTCCTCAGCGGCAGCGGCATTGTCACCAACGTCACTCTCCGACAGCCCGCCGCGCCCACCGGAGTCATCACCCTCCACGGAAGGTTCGAGATTCTCTCCCTCTCCGGCGCGTTTTTGCCCTCCCCCTCGCCTCCCGGCGCCACCGGACTCTCCGTCTACTTGGCCGGAGGGCAGGGGCAGGTTGTTGGCGGCACCGTTGCGGGTTCTCTGGTGGCCTCCGGGCCGGTGATGGTGATCGCCGCCACGTTCGCCAATGCTACCTACGAGAGGCTGCCGCTGGAGGAAGAACAAGGTGAAGAGGAAATGCAAGTGCAACAACAGCAGCAGCAGCAGCCACAACAACAATCTCAGGGTTTGGGTGAACAAGTTTCAATGGCCATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTATATTGGGGAGCTGCTCCACCTCGTCCTCCACCCTCCTTCTGA 864 0.5995 MANRWWAGNVGMIREQELMENNNNANTTPTNSSNSNTNANTNTTEEEVSRDNGDDQNQNLGSHEGSEPGSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIASGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPTGVITLHGRFEILSLSGAFLPSPSPPGATGLSVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEEEQGEEEMQVQQQQQQQPQQQSQGLGEQVSMAMYNLPPNLLHNGQNMPHDVYWGAAPPRPPPSF* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2424 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Pvu1g2424 287 PIRSF ESCAROLA 11 286 IPR014476 GO:0003680
Pvu1g2424 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
Pvu1g2424 287 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Pvu1g2424 287 MobiDBLite consensus disorder prediction 224 250 - -
Pvu1g2424 287 CDD DUF296 101 212 IPR005175 -
Pvu1g2424 287 MobiDBLite consensus disorder prediction 22 94 - -
Pvu1g2424 287 MobiDBLite consensus disorder prediction 22 46 - -
Pvu1g2424 287 Gene3D - 100 242 - -
Pvu1g2424 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 282 - -
Pvu1g2424 287 MobiDBLite consensus disorder prediction 231 250 - -
Pvu1g2424 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 282 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2424 Pvu-Chr1 49546936 49548494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2424 1 287 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.696 2.69e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2424 - - gmx:102667174 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2424 1 49546936 49548494 Pvu1g2424 1 49546936 49548494 ECH
Pvu1g2424 1 49546936 49548494 Pvu8g2394 8 54628053 54629266 PCT