Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2415 ATGATGTCTTCTGGGACATCCTCGTACTGGTGCTACCGGTGCAGCCGCTTCATCCGCGTTTTGCGCCATGATGCCGTGGTCTGTCCCGACTGTGACAGCGGATTTATCGAAGAAATCGAACACCCGCCGCGTTCAGTTCACCTCGACCCTCGCCGCCGCCGCTTCCCCGCCGCCGCCATGTACATGATCGGTCAGCGCCCCGCCTCCGATAACGCTGCCCGTCCTGCTCTACGCCGCACCCGCCGCAACGGTGGTGACCGCTCCCCTTTCAACCCTGTTATCGTCCTCCGTGGCGGCGCAGCTGCCACCTCCGCTAGCAGCGAGGACGAAAGTCGAGGCTTTGAACTCTTCTACGACGATGGTGCCGGTTCTGGCCTGAGACCCCTGCCTCCGAGTATGTCAGAGTTTCTTCTCGGATCTGGATTCGATAGGCTTCTGGAACAACTCTCTCAGATTGAGATCAACGGTATTGGAAGGTACGAGCACCCTCCTGCCTCAAAAGCAGCCATAGATTCGTTACCGACCATCGAAATCGATGACACTCACTTAGCCATGGAATCACACTGCGCCGTTTGCAAAGAAGCTTTTGAATTAGGTACGGCTGTGAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTTGCCCTTCACAATTCTTGTCCTGTTTGTCGGCACGAGTTACCTGCGGATTCCTCAAATGTAAATTCTAATGCGAATTCAAATCCACCACAAAACGTGGGCTTGAACGAGGAAGAGAATGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTGGGGAGATTCTCCGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTGTATACTGAGATGGATGGAGGGTTTAACAATGGAGGTGAGCCTAGAAGGATTTCATGGTCTTCTAGAGGGAACAGAGGGAGAGAGAGTGGGGGATTGAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGGAAGTAGTGGTACTAATGCTACACAGCGTTCTACTTCTAGTAGAGAGTCTATGAGAGCAAGTTCTTCTCGTTCTAGTATGGATCCTTCTCCGCGGTCACGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGAGCATGGTAG 1161 0.5306 MMSSGTSSYWCYRCSRFIRVLRHDAVVCPDCDSGFIEEIEHPPRSVHLDPRRRRFPAAAMYMIGQRPASDNAARPALRRTRRNGGDRSPFNPVIVLRGGAAATSASSEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSSNVNSNANSNPPQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGLNRFFRNLFGCFRGGVGSSGTNATQRSTSSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2415 386 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Pvu1g2415 386 SUPERFAMILY RING/U-box 169 239 - -
Pvu1g2415 386 MobiDBLite consensus disorder prediction 302 321 - -
Pvu1g2415 386 Pfam Protein of unknown function (DUF1117) 260 365 IPR010543 -
Pvu1g2415 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Pvu1g2415 386 SMART ring_2 189 229 IPR001841 -
Pvu1g2415 386 Pfam Ring finger domain 188 230 IPR001841 -
Pvu1g2415 386 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Pvu1g2415 386 MobiDBLite consensus disorder prediction 338 386 - -
Pvu1g2415 386 MobiDBLite consensus disorder prediction 339 378 - -
Pvu1g2415 386 CDD RING-H2_RNF126_like 189 230 - -
Pvu1g2415 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 332 - -
Pvu1g2415 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 3 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2415 Pvu-Chr1 49497005 49498968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2415 128 239 C3H Transcription Factor Family AT5G01980 41.071 3.77e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2415 - K11982 gmx:100807324 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2415 1 49497005 49498968 Pvu8g2119 8 51564987 51567671 ECH
Pvu1g2415 1 49497005 49498968 Pvu1g2415 1 49497005 49498968 ECH