Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2414 ATGGCCTCCAATATCCTCCTCCTCCTGCTCCATCTTCCTCCTCTTACAATTACCCTTTTCACTGTTTTTATCCAAATCCAAACAACAACTTCTTCACCCCAAGGCCCTCTCATATTGCCTCTAATATCCCAGACACTCTCACATGGGTTTGTTTCTGTTCCAACTCCTTCTTCACGTAAGCTCTCATTCCACCACAACGTCACCTTAACCGTTTCACTCACCGTAGGCACGCCCCCACAGAGCGTTACCATGGTCCTCGACACAGGTAGCGAACTCTCGTGGCTCCACTGTAAAAAAAACCAAAACATTAACTCAATCTTCAACCCACAACTCTCTTCCTCCTACACTCCAACACCCTGCACCTCACCTATTTGCACCACCCGGACCCGAGATTTCTCCATACCCGTTTCCTGCGACCCGGCAAAGCTCTGCCACGCCACCGTCTCATACGCTGACGCCACCTCCTTAGAGGGGAACCTCGCCACTGACACGTTCTCCTTATCCGGTTCGGGTCAACCCGGTATTATTTTCGGCTGTATGGACTCCGGGTTCAGCTCCAACACCAAGGAAGATTCCAAAACAACCGGGTTAATGGGCATGAACCGCGGGTCGCTCTCGTTTGTTACGCAAATGGGGTTTCCGAAATTCTCGTACTGCATCTCCAGCCACGATGCCTCCGGCGTGTTACTCTTCGGCGACGCCAAACTCACGTGGCTGGGTCCTTTGAAGTACACGCCGCTGGTGAAGATGAATACCCCATTACCCTACTTCGACCGGGTCGCATACACGGTTCGGTTGGTGGGTATTCGGGTCGGTTCAAAGCCATTGCAGGTGCCGAAGTCAATTTTCGCGCCGGACCATACTGGGGCGGGACAGACAATGGTGGATTCGGGTACCCAATTCACTTTCCTTCTCGGGTCGGTTTACACTGCTCTAAAGAACGAGTTTTTGGAACAGACGAAAGGGGTGCTGACCCTTTTGGAAGATAAAAATTTTGTGTTTGAAGGAGCGATGGATTTGTGTTTTCGGGTCAGAGGGGGTGCTGTGCCGACGGTGCCCGCCGTGACAATGGTGTTTGAGGGGGCGGAGATGGGTGTGTCCGGGGAGAGGCTACTGTATCGAGTGGGTGATGACGCGGCAATGGGAAAAGATGTGTATTGTTTGACGTTTGGGAATTCAGATTTGTTGGGAATTGAGGCTTATGTGATTGGGCACCATCATCAGCAGAACGTGTGGATGGAGTTTGACTTGGTCAACTCAAGAGTTGGATTTGCTGACACAAGGTGTGAACTTGCGAGTCGAAGACTTGGCATGAGTTCTTAG 1323 0.5147 MASNILLLLLHLPPLTITLFTVFIQIQTTTSSPQGPLILPLISQTLSHGFVSVPTPSSRKLSFHHNVTLTVSLTVGTPPQSVTMVLDTGSELSWLHCKKNQNINSIFNPQLSSSYTPTPCTSPICTTRTRDFSIPVSCDPAKLCHATVSYADATSLEGNLATDTFSLSGSGQPGIIFGCMDSGFSSNTKEDSKTTGLMGMNRGSLSFVTQMGFPKFSYCISSHDASGVLLFGDAKLTWLGPLKYTPLVKMNTPLPYFDRVAYTVRLVGIRVGSKPLQVPKSIFAPDHTGAGQTMVDSGTQFTFLLGSVYTALKNEFLEQTKGVLTLLEDKNFVFEGAMDLCFRVRGGAVPTVPAVTMVFEGAEMGVSGERLLYRVGDDAAMGKDVYCLTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFADTRCELASRRLGMSS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2414 440 PANTHER ASPARTYL PROTEASE-RELATED 18 438 IPR001461 GO:0004190|GO:0006508
Pvu1g2414 440 Gene3D Acid Proteases 62 232 IPR021109 -
Pvu1g2414 440 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 18 438 - -
Pvu1g2414 440 Pfam Xylanase inhibitor N-terminal 71 233 IPR032861 -
Pvu1g2414 440 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 84 95 IPR001969 GO:0004190|GO:0006508
Pvu1g2414 440 CDD pepsin_A_like_plant 68 429 IPR034161 -
Pvu1g2414 440 Gene3D Acid Proteases 239 434 IPR021109 -
Pvu1g2414 440 SUPERFAMILY Acid proteases 69 429 IPR021109 -
Pvu1g2414 440 Pfam Xylanase inhibitor C-terminal 261 425 IPR032799 -
Pvu1g2414 440 ProSiteProfiles Peptidase family A1 domain profile. 69 425 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2414 Pvu-Chr1 49487245 49488567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2414 37 430 Miscellaneous Gene Families AT1G44130 25.527 3.31e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2414 - - gmx:100783835 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2414 1 49487245 49488567 Pvu1g2414 1 49487245 49488567 ECH
Pvu1g2414 1 49487245 49488567 Pvu8g1224 8 14963530 14964980 ECH