Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2408 ATGGCTATCAGCCAAAGTATACTATGCTTCATCACTTTCACTTGTTTCATGCACGTAACGAAACCTTCAAACTTGAACACAGACGAGTTACTACAGGGTCATGAGTTCACAACAAGTGACCGTTTGATTTCACCTACAGGTTGGTATACAATGAGTTTCTTTCAGAATAAAGGCTCTGAAGATTTCTACCTTGGAATTGGAAAATCAGCTGAAAATTCAACTGATCAGAATTTCTGGATTGCTAATAGAGACATGCCAATCCAGGATCCTGCAACGTTTCTCATAATTGATGAATTTGGTAACTTGAAAATTATTTCCAACCGGGAAAGAAATTCCAGTATCATGCTCTATTCTTCTGATGCTGGAAGAGAAGTTAACAGCAATACTACCTTCAACGCCATATTGCAAGATACTGGCAACCTTATGCTTCGTGAAGTGAACCAAAATGGATCTCTGAAGAGGATATTATGGCAAAGCTTTGATCATCTCTCACACGTTCTTATGATGGGGATGAGACTAGGGTTTAACAGAAAAACAGGTCAAAATTGGTCTATAACATCACGGAGAAGTGAAAAGACTCTTTTGTCAGGGTCTTTCACCCTTGGCCTTGAGCCCAAAACGAAGCAATTGATGATATGGTGGCGGGGGAACATTTTTTGGAGTAGTGGGCAATGGAGCAATGGAAGCTTTGCCAATCTAAAGTCTCCACTTTATGAGAAGGACTTCGAATTCGATTACTGCTCAAATGAAAATGAAACCTATGTGTCATATCTTCCTAGTTATATCTACTTAGAGCCTTCAGGTTCAATATATGGCGGCATATCTGGTGTTTCTTACTCATGCGTCAATAACTACTTTCTATCTGGTTGTTCAATGCCAAGTGTTCCCAAATGTAGAGATCATGAAAGTTTGTACCGGGGTAGCAGGAATAGCTATGGAGTAATGCAAGGGACAGGTTTCAAATTTGATGAAAGTGAGAACCTGACAAGTTTTGATTGCTGGATGAAGTGCTTGAACAATTGCAGTTGTGAGGCCTACTCTTACGTTAACGAGGATGAAACTGGGTGTGAGATATGGAGCAGGGACTCAGCAAACTTTGTGGCCACTACTAATTTGACTGCTGGAGGGCGTCAGATATACTTCCTTGTTGGTAGAAAAAAAGCTGATGATCGCAAGAAGCGAACAAAATTATTGTCTGAAATCGGAGGAAATACTGCAATTTCCATTGCTTACAATGAAAGAAACGAACAAAAGAAAAAGGGAAAGACCAGTGATGATATGTATATTTTCAATTTTCAAACTATTCTTGAGGCAACTGCCAATTTTTCTTCCACAAATAAGATAGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGGAAGTTACCAAGTGGACAAGAAGTAGCCATAAAGAGACTTTCAAAAAGCTCGGGACAAGGGCTGATAGAGTTTAAGAATGAAGCGATGCTAATTATCAAACTCCAACACACCAACTTGGTGAAACTGCTTGGTTTTTGTATTGACAAAGAAGAAAGGATATTAGTTTATGAGTACCTTCCCAACAAAAGTTTGAATTTGTACCTCTTTGGTTCTAACCAAGACACTACAATGGAATGGAACACACGATGCAAAATTATTGAAGGAGTTGCACAAGGACTTGTATATTTACATCAATATTCAAGATTAAAAGTGGTACATAGAGACTTGAAAGCGAGCAACATTTTATTAGACAATCAATTAAATCCAAAAATATCTGATTTTGGTACGGCTAGAATATTTGGATTGACAGAATCTGAAGAACGAACTAACAGAATTGTTGGAACATTTGGTTATATGTCTCCGGAATATGCTATGATGGGTGTTATCTCAACTAAATTAGACGTTTACAGCTTTGGCATCCTTCTGTTAGAGATTTTAAGTGGAAAGAAGAATAGTACTGATTATCCATTTAATCTTGTTTTTAATGCATGGAAATTATGGAATGAAGGTGAAGCTCTAAATCTAATGGACTCAAACATGAATGGATCATACTCCCCTACACAAGTGTTAAGATACATTCATATTGGTCTATTGTGCACACAAGATCAAGCAAGAAACAGACCCACTATGCTTGAGGTTGTTTCTTTTCTTTCAAATGAAATTACACATTTACCTCAACCTACACAACCAGGATTTTGTGTCACTGGAGGAGTGGAAAATAGAGATGTGCACTACACTTGTTCCATAAAGGAGACAACACATTCATTGACTTCAGGTAGATAA 2259 0.3807 MAISQSILCFITFTCFMHVTKPSNLNTDELLQGHEFTTSDRLISPTGWYTMSFFQNKGSEDFYLGIGKSAENSTDQNFWIANRDMPIQDPATFLIIDEFGNLKIISNRERNSSIMLYSSDAGREVNSNTTFNAILQDTGNLMLREVNQNGSLKRILWQSFDHLSHVLMMGMRLGFNRKTGQNWSITSRRSEKTLLSGSFTLGLEPKTKQLMIWWRGNIFWSSGQWSNGSFANLKSPLYEKDFEFDYCSNENETYVSYLPSYIYLEPSGSIYGGISGVSYSCVNNYFLSGCSMPSVPKCRDHESLYRGSRNSYGVMQGTGFKFDESENLTSFDCWMKCLNNCSCEAYSYVNEDETGCEIWSRDSANFVATTNLTAGGRQIYFLVGRKKADDRKKRTKLLSEIGGNTAISIAYNERNEQKKKGKTSDDMYIFNFQTILEATANFSSTNKIGEGGFGPVYKGKLPSGQEVAIKRLSKSSGQGLIEFKNEAMLIIKLQHTNLVKLLGFCIDKEERILVYEYLPNKSLNLYLFGSNQDTTMEWNTRCKIIEGVAQGLVYLHQYSRLKVVHRDLKASNILLDNQLNPKISDFGTARIFGLTESEERTNRIVGTFGYMSPEYAMMGVISTKLDVYSFGILLLEILSGKKNSTDYPFNLVFNAWKLWNEGEALNLMDSNMNGSYSPTQVLRYIHIGLLCTQDQARNRPTMLEVVSFLSNEITHLPQPTQPGFCVTGGVENRDVHYTCSIKETTHSLTSGR* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2408 752 Gene3D Phosphorylase Kinase; domain 1 404 517 - -
Pvu1g2408 752 CDD STKc_IRAK 448 709 - -
Pvu1g2408 752 ProSiteProfiles Bulb-type lectin domain profile. 27 156 IPR001480 -
Pvu1g2408 752 Gene3D Transferase(Phosphotransferase) domain 1 518 718 - -
Pvu1g2408 752 ProSiteProfiles Protein kinase domain profile. 442 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2408 752 Gene3D - 23 161 IPR036426 -
Pvu1g2408 752 ProSiteProfiles PAN/Apple domain profile. 298 385 IPR003609 -
Pvu1g2408 752 Pfam D-mannose binding lectin 78 189 IPR001480 -
Pvu1g2408 752 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 75 733 - -
Pvu1g2408 752 SMART blect_4 33 163 IPR001480 -
Pvu1g2408 752 PIRSF SRK 275 411 IPR024171 GO:0004674
Pvu1g2408 752 PIRSF SRK 403 752 IPR024171 GO:0004674
Pvu1g2408 752 PIRSF SRK 1 270 IPR024171 GO:0004674
Pvu1g2408 752 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 226 IPR036426 -
Pvu1g2408 752 SUPERFAMILY Protein kinase-like (PK-like) 424 725 IPR011009 -
Pvu1g2408 752 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 733 - -
Pvu1g2408 752 Pfam PAN-like domain 326 362 IPR003609 -
Pvu1g2408 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Pvu1g2408 752 SMART ntp_6 307 384 IPR003609 -
Pvu1g2408 752 SMART serkin_6 442 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2408 752 Pfam Protein kinase domain 443 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2408 Pvu-Chr1 49389794 49392934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2408 430 738 Receptor kinase-like Gene Family AT4G11530 56.190 4.36e-117 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu1g2408 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2408 - - pvu:PHAVU_001G233000g 1527.3