Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2401 ATGGGTTGCTGCTTTAGTGCTCCTCTAAAGATCAAAGCCGAGAGTCCTCCACGTAATGGTTTGAAAATAGATGGTAGTAAAGAAGAGAATGATCCGAGTGGTTTAAGCGGCAAGGTGTCCTCTTCATCTATGCTTCTAACTCCTCAGAGTGAGGATGAGATATTAGAGGCCACCAATTTGAAGAATTTTACATTCAATGAACTAAGAACTGCTACAAGGAACTTTCGTCCAGATAGTAGGGTAGGTGAAGGGGGGTTTGGTAGTGTGTTTAAAGGGTGGATTGATGAGCACACGCTTGCCCCTACTAAAGCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAACCAGGGACACACTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGAGTCATCCTAATCTTGTGAAGCTAATTGGTTACTCCTTGGAGGATGATCACCGGATTTTGGTGTATGAGTTTGTGGCCAAGGGTAGCTTGGATAATCACTTGTTTAGGAGGGCTTCTTACATTGAACCACTCTCTTGGAACATCCGTATGAAGATTGCTCTTGATGCTGCTAAGGGCCTTGCATTTCTTCACAGTGATGAAGTGGATGTAATATTTAGGGACTTCAAAACTTCTAATATCTTACTTGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAAATGGACCACAAGGTGACAAGAGTCATGTTTCTACAAGGGTGATGGGCACCTTTGGCTACGCTGCTCCTGAGTATATTGCCACAGGGCACCTAACCAAAAGGAGTGACATATACAGTTTTGGAGTTGTTCTTCTCGAACTTATGTCAGGAAAACGTGCACTGGACGACAACAGGCCAAGTGGGGAGCATAATTTAGTTGAATGGGCCAAACCACTTCTGATAAACAAACACAAGATTTCTCAAGTCATGGATGCACGTATAGAAGGCCAATACTCTAAGCGAGAAGCCAAGAGAATAGCTCACCTTGCAATTCAATGCCTATCTACAGAACAAAAAGTTAGACCAAACATAGAAGATGTGGTGAGATCATTGGAACATCTTCAGGATTCCAATCACACACAAATAAATGGTCATAGCTCTACCACCAATTCTACTCCTATTTCTAGTTTGTCTCCTTCTCCTCTTCGTACATAG 1173 0.4271 MGCCFSAPLKIKAESPPRNGLKIDGSKEENDPSGLSGKVSSSSMLLTPQSEDEILEATNLKNFTFNELRTATRNFRPDSRVGEGGFGSVFKGWIDEHTLAPTKAGTGMVIAVKRLNQESNQGHTEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYIEPLSWNIRMKIALDAAKGLAFLHSDEVDVIFRDFKTSNILLDSNYNAKLSDFGLAKNGPQGDKSHVSTRVMGTFGYAAPEYIATGHLTKRSDIYSFGVVLLELMSGKRALDDNRPSGEHNLVEWAKPLLINKHKISQVMDARIEGQYSKREAKRIAHLAIQCLSTEQKVRPNIEDVVRSLEHLQDSNHTQINGHSSTTNSTPISSLSPSPLRT* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2401 390 SUPERFAMILY Protein kinase-like (PK-like) 52 365 IPR011009 -
Pvu1g2401 390 PANTHER OS01G0588500 PROTEIN-RELATED 27 382 - -
Pvu1g2401 390 Pfam Protein tyrosine and serine/threonine kinase 79 357 IPR001245 GO:0004672|GO:0006468
Pvu1g2401 390 ProSiteProfiles Protein kinase domain profile. 75 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2401 390 PANTHER KINASE 1B 27 382 - -
Pvu1g2401 390 MobiDBLite consensus disorder prediction 12 43 - -
Pvu1g2401 390 CDD STKc_IRAK 81 360 - -
Pvu1g2401 390 Gene3D Transferase(Phosphotransferase) domain 1 161 381 - -
Pvu1g2401 390 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Pvu1g2401 390 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Pvu1g2401 390 MobiDBLite consensus disorder prediction 361 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2401 Pvu-Chr1 49318730 49322719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2401 49 360 Glycoside Hydrolase AT3G07070 47.950 3.26e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu1g2401 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2401 - - var:108326804 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2401 1 49318730 49322719 Pvu8g2415 8 54769203 54773797 PCT