Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2394 ATGGAGAGTCCCCATTCCCTCTCTCCCTCATCATCCTCCTCTTATTCCTCCGACGGTGTCACTTTCGACACGGAGGAGCCACGGACGCCGCTCGCCGTACGCCGCGCGTTGCACCTCATCAACTCCGGCGAGCCCCATCTCTGCCTCCAGGCCGCTCGTGACATCCGCCGACTCACCAAGACGTCCCAGCGCTGTCGACGCCAACTGTCTCAGGCTGTCGGTCCACTCGTTTCTATGCTCCGAGTCGACTCGCCCGAGTCACACGAATCCGCTCTTCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAACAAAATCAGTATTGTGGAGGCTGGTGCATTAGAACCGATAGTTAGTTTCCTCAAGTCTCAAAATCTAAATCTGCAGGAGTCTGCAACTGCATCATTGCTCACACTATCTGCCTCTTCTACCAACAAACCAATTATCAGTTCTTGTGGTGCCATTCCTCTTCTTGTAGATATCCTTAGAGACGGAAGCCCTCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACCCTACTAATCTCAGAACCATTCTTGAGACAAACCCAATCCCTTCCGTGGTTGATCTTCTTAAAAAATGTAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCCTTGGTGGACTATGATGAGGGCAGAACTGCCTTGACATCTGAGGAAGGCGGGGTTCTGGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTTCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCAATTCTAAGAGAAGGTGTCATTCCAGGACTTCTTGAGCTTACTGTTCAAGGGACACCCAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGCGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACTCTGGAGAATATAGTATGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTAAGCATGGAACAAAGTCTGAGGCATTTACAACAAAGGGCTCTCGTGTGCACCCCAAGTGATCTTCCTATAGCTGGCTGTGCTTCTGAGGTTTCTTCAAAATGA 1164 0.4854 MESPHSLSPSSSSSYSSDGVTFDTEEPRTPLAVRRALHLINSGEPHLCLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRVDSPESHESALLALLNLAVKDEKNKISIVEAGALEPIVSFLKSQNLNLQESATASLLTLSASSTNKPIISSCGAIPLLVDILRDGSPQAKADAVMALSNLSTHPTNLRTILETNPIPSVVDLLKKCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2394 387 SUPERFAMILY ARM repeat 36 336 IPR016024 -
Pvu1g2394 387 SMART arm_5 143 183 IPR000225 GO:0005515
Pvu1g2394 387 SMART arm_5 184 226 IPR000225 GO:0005515
Pvu1g2394 387 SMART arm_5 61 100 IPR000225 GO:0005515
Pvu1g2394 387 SMART arm_5 102 142 IPR000225 GO:0005515
Pvu1g2394 387 SMART arm_5 228 268 IPR000225 GO:0005515
Pvu1g2394 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 71 113 IPR000225 GO:0005515
Pvu1g2394 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Pvu1g2394 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Pvu1g2394 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Pvu1g2394 387 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Pvu1g2394 387 MobiDBLite consensus disorder prediction 1 27 - -
Pvu1g2394 387 PANTHER U BOX DOMAIN-CONTAINING 11 370 - -
Pvu1g2394 387 Gene3D - 20 370 IPR011989 -
Pvu1g2394 387 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g2394 387 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2394 Pvu-Chr1 49265697 49269780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2394 50 310 U-box Gene Family AT2G23140 34.981 4.17e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2394 - - gmx:100809684 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2394 1 49265697 49269780 Pvu1g2394 1 49265697 49269780 ECH
Pvu1g2394 1 49265697 49269780 Pvu8g2423 8 54837849 54841531 PCT