Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2393 ATGGCACTGGCCAAACACCAAAAAATTCCACATAATTCAAACATGAGCACCAAGGTTCCAAACTGTGTTTTCAGTGAGACTGTGGAGACTACCTCCGTCACTGTTCATAGAGTCAATGAGTACCACAAATCGGCTTTAGAAGAGGAAGATGGCTCCCAAACTACGCATGGTCTCAGCAATGATTCAGGTATAACGCATTGTGACAAAGGGTATACTCATAAGGACACAAATTACCAGCTTGATGAAGAAGAATCGCTGATAAATTTCAAAGGGTACAGTAATCTCATGCAAGCTGGTGAATCTTTGCTTAGCTTTCAGCACAACAGGTTGGTCCCTGACAACTGTTATTTGAAAGATAATATTCAGAAAGAGTACTCTGTTTGGGAGAATAATTTGCATCAAAGCCATAACCATTGGAATCAGACTAGTCCAAGAAGCACTAAAGACATGCGCCTAGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTGGCTATAGCTCCATAGTCGATAATGCAAAAGAGAATCAACATGGAGAAGGTTCATCAGGGTGGCTCTACTCAGCACCAACTATCCCTAATCATAGGAGCCTCCACGAGTTAGGAGCACGAGAGGTTGTGCTGCAAAAGCGCCCTTCAATGGGAGAGAGCATGAAAGCTGCCAAGAAGCAATGCTCAAGTGGGAGCAAAACGCCAAAACATAAGTCAATCCCATCCAAGGATCCTCAAAGTGTGGCCGCCAAGAATCGAAGAGAGAGGATAAGTGAACGATTGAAGATACTACAAGAACTAGTGCCCAACGGTTCCAAGGTTGATATGGTTACTATGCTGGAGAAAGCAATTAGCTATGTAAAGTTTCTTCAACTTCAAGTGAAAGTGTTGGCAACTGATGAATTTTGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGTCATTCGTTCATCACAAAGAGAGAGAAGTTTAAACTAA 990 0.4253 MALAKHQKIPHNSNMSTKVPNCVFSETVETTSVTVHRVNEYHKSALEEEDGSQTTHGLSNDSGITHCDKGYTHKDTNYQLDEEESLINFKGYSNLMQAGESLLSFQHNRLVPDNCYLKDNIQKEYSVWENNLHQSHNHWNQTSPRSTKDMRLVQDFNCFQTASGYSSIVDNAKENQHGEGSSGWLYSAPTIPNHRSLHELGAREVVLQKRPSMGESMKAAKKQCSSGSKTPKHKSIPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKPPDISQVKEVIDVIRSSQRERSLN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2393 329 MobiDBLite consensus disorder prediction 44 65 - -
Pvu1g2393 329 SMART finulus 243 292 IPR011598 GO:0046983
Pvu1g2393 329 Pfam Helix-loop-helix DNA-binding domain 247 287 IPR011598 GO:0046983
Pvu1g2393 329 Gene3D - 233 294 IPR036638 GO:0046983
Pvu1g2393 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 53 321 - -
Pvu1g2393 329 MobiDBLite consensus disorder prediction 51 65 - -
Pvu1g2393 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 53 321 - -
Pvu1g2393 329 MobiDBLite consensus disorder prediction 211 250 - -
Pvu1g2393 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 298 IPR036638 GO:0046983
Pvu1g2393 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Pvu1g2393 329 CDD bHLH_AtIND_like 238 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2393 Pvu-Chr1 49254549 49256564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2393 60 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.444 1.51e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g2393 HLH 7.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2393 - - gmx:100810010 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2393 1 49254549 49256564 Pvu1g2393 1 49254549 49256564 ECH
Pvu1g2393 1 49254549 49256564 Pvu8g2424 8 54849880 54851537 PCT