Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2386 ATGACTTTGGGATACCCATTTGTTCTCTCTTTGAAAAATTCCATTTTTCTTCATTTCCTCACATATTTCGCCATGGAGAACTTGCTGGGTCTGCTGAGAATTCATGTTGAAAAAGGTGTCAATCTTGCTATCAGGGATGTGGTGAGCAGTGATCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGCTGAAGACTCGGGTGGTCAAGAAGAATTTAAATCCTGAATGGAATGATGACTTGACCCTGTCTATTTCAGACCCTCATACTCCAATCCATCTACAAGTGTATGACAAGGACACATTCAGCATGGATGACAAAATGGGGGATGCTGACTTTTCTATAGTTCCATTCACCGAAGCAGTGAAGATGCGGTTGGCAGGTCTCCCCAACAACACTATAGTTACAAAAGTGTTACCCAGCAGACAAAACTGCTTAGCTGAAGAGAGTCACATTGTCTGGAAGGATGGCAAAGTTGTGCAAAACATGGTTCTTAGACTAAAAAATGTGGAGTCTGGAGAGGTGGAACTCCAGTTAAATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 570 0.4228 MTLGYPFVLSLKNSIFLHFLTYFAMENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVKKNLNPEWNDDLTLSISDPHTPIHLQVYDKDTFSMDDKMGDADFSIVPFTEAVKMRLAGLPNNTIVTKVLPSRQNCLAEESHIVWKDGKVVQNMVLRLKNVESGEVELQLNWIDIPGSRHL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2386 189 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 26 115 IPR035892 -
Pvu1g2386 189 ProSiteProfiles C2 domain profile. 11 130 IPR000008 -
Pvu1g2386 189 SMART C2_3c 31 126 IPR000008 -
Pvu1g2386 189 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 17 187 - -
Pvu1g2386 189 CDD C2_ArfGAP 29 172 - -
Pvu1g2386 189 Gene3D C2 domain 26 188 IPR035892 -
Pvu1g2386 189 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 187 IPR044562 -
Pvu1g2386 189 Pfam C2 domain 30 114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2386 Pvu-Chr1 49208369 49210769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2386 62 189 C2H2 Transcription Factor Family AT1G70790 57.692 3.33e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2386 - - pvu:PHAVU_001G230800g 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2386 1 49208369 49210769 Pvu4g1597 4 43186492 43189050 ECH
Pvu1g2386 1 49208369 49210769 Pvu1g2386 1 49208369 49210769 ECH
Pvu2g0993 2 17921506 17924314 Pvu1g2386 1 49208369 49210769 ECH
Pvu3g0329 3 3072941 3076157 Pvu1g2386 1 49208369 49210769 ECH