Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2380 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGAGGTAGAGGTAGAGGAGGACGTGGCAGAGCCCAGCCTGGCCGTGGTCCAAGCGGGGCTCTTAATGGTGGAAGAATGGCTGGTGCTGTTAATAGCAGAAGAATGACTGGTGCTGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCATATGCTATTGCCAAGTCTATTCGCAGAACGAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAATTGTATGTTTCCAACTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTATGCTGTTCATTACGACAAAAATGGACATCCAAGTGGTTCGGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTGCTTTTGGATGGCAAGCCCATGAAGATTGAGATTGTTGGTTCCAATGGGGAATTGCCTATAAGTGCTCGGGTGAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGACAAGCTGGAGTTCCTGCTATTCGTAATCGTGGTGCTGGTTGGGGAAGGCGTGGTGGCACAAGGAGTGGCAATGGTCAGGGTCGTGGTGGCGGAGGTCGTGGTCGCGGCAATGCTCGTGGTGGTAACACTGGTAGAGGTGGAGGTCGAGGCCGAGGTAGAAAGGACACTGTTGAGAAGTCCGCAGAGGAACTTGACAAAGAACTGGATACCTATCATGCTGAGGCCATGAACATCTCTTGA 909 0.4829 MASSLDMSLDDRIKNRSNRGGRGRGGRGRAQPGRGPSGALNGGRMAGAVNSRRMTGAGNGGRTSGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNGELPISARVNVTGVNGRRKRTVVMTPRGGQAGVPAIRNRGAGWGRRGGTRSGNGQGRGGGGRGRGNARGGNTGRGGGRGRGRKDTVEKSAEELDKELDTYHAEAMNIS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2380 302 MobiDBLite consensus disorder prediction 222 288 - -
Pvu1g2380 302 MobiDBLite consensus disorder prediction 1 72 - -
Pvu1g2380 302 Gene3D - 111 192 IPR012677 -
Pvu1g2380 302 MobiDBLite consensus disorder prediction 271 288 - -
Pvu1g2380 302 Pfam C-terminal duplication domain of Friend of PRMT1 239 296 IPR025715 -
Pvu1g2380 302 PANTHER THO COMPLEX SUBUNIT 4C 1 301 - -
Pvu1g2380 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Pvu1g2380 302 SUPERFAMILY RNA-binding domain, RBD 110 190 IPR035979 GO:0003676
Pvu1g2380 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Pvu1g2380 302 SMART FoP_duplication_2 226 302 IPR025715 -
Pvu1g2380 302 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 301 - -
Pvu1g2380 302 Coils Coil 277 297 - -
Pvu1g2380 302 SMART rrm1_1 117 189 IPR000504 GO:0003723
Pvu1g2380 302 CDD RRM_THOC4 116 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2380 Pvu-Chr1 49145323 49151877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2380 115 190 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.87e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2380 K12881 - gmx:100820344 447.203