Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2377 ATGGGAAGACAACCTTGCTGTGACAAAGTGGGATTGAAGAAGGGTCCATGGACTGCAGAGGAGGATAAGAAACTCATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGACTGTTAAGGTGTGGCAAAAGTTGCAGGCTCAGATGGACAAATTACCTAAGGCCAGACCTGAAGAGAGGCCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGGTGGTCTAAGATTGCTTCTCATCTCCCGGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACTCACATAAAGAAAAAGCTCAAAAAAATGGGAATTGATCCTGTTACCCACAAGTCACTTTCCACTACAACTGAGCAAATCCAAGTCCAACCAGATCAACAACCCCATCAGCCATTGCAAGAACAACATCAGCAACAAGCTATCCAAGTTGAGGAAAACCCCAAATTTGAGCCTGAAAGTGAGCAAAACAAGGAGCCAGAGACTTCATTTGAATTATCAAGCATAACTGAAGAAGCTAAGGAGGAAGAGCAAATCATGACACCCCTTTTTGACTCCATGGAACTAATGAATGAGTTCTGCACTGATGAAGTTCCCATAATAGAAGCCAGTGAGATATTAGTTCCATCTGCTACTTCCACTTCACCAACCACTACAACATCATCTTCAACATCATCATCTTCTTATTCAAATTCCCCCAACTTCTTTGAAGACCTGGTGCTCCCAGATTTTGACTGGTCCGATGATTACAATGATACTAAGATTGACAATAACAATAGCAGTATGGCCTTGTGGGATGATGACTTGATTAGAAGTTGGAATTTGCTTATTAATGATGATGGTGATGGTGACAGAAAGCAAGTGTTTGACACTCAGGTCAATCAGTACCCAAGAGTGATCATGGATTCAGAATCTTGGGCATATGGGTTGTTTTGA 981 0.4179 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSTTTEQIQVQPDQQPHQPLQEQHQQQAIQVEENPKFEPESEQNKEPETSFELSSITEEAKEEEQIMTPLFDSMELMNEFCTDEVPIIEASEILVPSATSTSPTTTTSSSTSSSSYSNSPNFFEDLVLPDFDWSDDYNDTKIDNNNSSMALWDDDLIRSWNLLINDDGDGDRKQVFDTQVNQYPRVIMDSESWAYGLF* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2377 326 SMART sant 66 114 IPR001005 -
Pvu1g2377 326 SMART sant 13 63 IPR001005 -
Pvu1g2377 326 MobiDBLite consensus disorder prediction 225 246 - -
Pvu1g2377 326 CDD SANT 16 61 IPR001005 -
Pvu1g2377 326 MobiDBLite consensus disorder prediction 130 160 - -
Pvu1g2377 326 Gene3D - 11 67 - -
Pvu1g2377 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu1g2377 326 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pvu1g2377 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu1g2377 326 MobiDBLite consensus disorder prediction 130 190 - -
Pvu1g2377 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu1g2377 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu1g2377 326 CDD SANT 74 112 IPR001005 -
Pvu1g2377 326 Gene3D - 70 164 - -
Pvu1g2377 326 PANTHER MYB TRANSCRIPTION FACTOR 1 297 - -
Pvu1g2377 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu1g2377 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu1g2377 326 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2377 Pvu-Chr1 49118383 49120723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2377 1 295 MYB Transcription Factor Family AT1G66230 55.738 3.92e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g2377 Myb_DNA-binding 9.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2377 K09422 - gmx:100803624 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2446 8 55036817 55039253 Pvu1g2377 1 49118383 49120723 PCT