Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2364 ATGACTAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACTCAGCTAGGAAGGCAACGTTCAAGAAGAGGAAGAAGGGTCTAATGAAGAAGGTGAGTGAACTTAGCACCCTCTGTGGGATTGATGCATGTGCTATAGTTTATAGTCCTTATGATCCTCAACCCGAGGTTTGGCCATCCCCAATGGGGGTCCAAAGGGTGCTTGCCAAGTTCAGAAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGAATCCTAAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAAGAGATGACTCAGCTCATGTTTCAGTACCTCAGTGCTGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGCTGATTGATCAAAATTTGAAGGACATCAACAGGAGGATTGAGGTGTTGACTAAGAATACTCAGAGTCAAACCCAAGTTGCAGCACCAGCGGTGACTGATGTTGTTGCCAAGATTGAAGACAAGGGACAAGGGAGTCATAATGGTCAGGGATTTGACATCAACATGGATCTCATGCACAAACAGAACTGGTTTATGAATTTGATGAATAGTGGTGGTGGTGGTGGGAATGAGACTATGCCTTTTGGAGATGTTAATCACCAAAATGGCTTTTGGCCAAACCCATTTTTCCATTGA 714 0.4314 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNTQSQTQVAAPAVTDVVAKIEDKGQGSHNGQGFDINMDLMHKQNWFMNLMNSGGGGGNETMPFGDVNHQNGFWPNPFFH* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2364 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu1g2364 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pvu1g2364 237 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Pvu1g2364 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 200 - -
Pvu1g2364 237 Coils Coil 91 114 - -
Pvu1g2364 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 - -
Pvu1g2364 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pvu1g2364 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu1g2364 237 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Pvu1g2364 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu1g2364 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2364 Pvu-Chr1 48972236 48972949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2364 1 156 Type I MADS-box Gene Family AT5G48670 68.590 2.97e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu1g2364 SRF-TF 3.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2364 - - gmx:100813231 439.499