Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2362 ATGAAACAACACTTTGATCTTGAACTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAACAGCCAGGTTGCTTCCAACATATCTATTCAAGAAACCTATGCAGGTCCTTGCAGTGACAACCTCACCAACTCTTCCCATGTCACAAAACCAATAGAACTTCATCTCCATTCAGATGCTATCTCCCTTGACTTAACTCTCAACTTCAACAACAATGAGTTGGTGGTTGCAGATTCATCAGGACTCTCATCCTCAAGCACTGCTAGCGAGAGCAACAACGATCCTCCCCCTCAAACCATGCCACGGGTCTTCTCTTGCAACTACTGTAACCGCAAGTTTTTCAGCTCTCAGGCTCTTGGAGGCCACCAAAATGCGCACAAGAGAGAAAGAACATTAGCAAAGAGAGCCTTGCGCATGGGGTTTTTCTCTGAGAGGTATGCCAGTCTAGCATCTCTCCCTCTTCACGGTTCTTTCAGGTCCTTAGGGATAAAGACACACTCTTCACTGCACCACGGCTTTTCACCAACAATGAGGCCTCCTGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATATTGGTCTTCCAATGTTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTATAAGGGAGGCCATACTCATCAGAATTTCACACTCAGTGGAAGCTCTAATTTGAGTTTTATTGGGGTGAATCATCCACCGGCTGACATAGAGAACTCAACACCTGAGTTGACATTGAAACTTTGA 771 0.4553 MKQHFDLELVASAEYESEVNSQVASNISIQETYAGPCSDNLTNSSHVTKPIELHLHSDAISLDLTLNFNNNELVVADSSGLSSSSTASESNNDPPPQTMPRVFSCNYCNRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYASLASLPLHGSFRSLGIKTHSSLHHGFSPTMRPPEMKSSARFEQGYIGLPMFLEEDEAELLWQGSYHQVPYKGGHTHQNFTLSGSSNLSFIGVNHPPADIENSTPELTLKL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2362 256 Gene3D Classic Zinc Finger 78 146 - -
Pvu1g2362 256 PANTHER ZINC FINGER PROTEIN JAGGED 1 256 IPR045320 GO:0003700
Pvu1g2362 256 SUPERFAMILY beta-beta-alpha zinc fingers 101 130 IPR036236 -
Pvu1g2362 256 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 256 - -
Pvu1g2362 256 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Pvu1g2362 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2362 Pvu-Chr1 48964611 48967254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2362 96 256 C2H2 Transcription Factor Family AT1G66140 49.462 2.46e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g2362 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2362 - - gmx:100815175 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2362 1 48964611 48967254 Pvu1g2362 1 48964611 48967254 ECH
Pvu1g2362 1 48964611 48967254 Pvu8g2469 8 55306967 55309730 PCT