Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2356 ATGCCCTTGGAAGGGATTTTCATTGAACCTACTTCAACTTCTACACCTGATCTTTCCCTTCACATAAGTCCACCAAGCACTTCATCTTCCTCTTCTCTGATTTGCAACAACACCACATCTGGTGGTGCCACCCACTATGAGGCTCACAATTCAACAAGCGCAAATTTCGCTTCTCCGGCTCACACCGAGCTTTCTTTGGGAAGGAATTTCAGTGGCGGAGGAAGAGGAGGTATTCAAGAACGGCCACCGCACAACAGCAACCCTTATTATCAAACACAACAGGCTCATTTCCATCATCTTCAAAACCATTCCAGCACTGGGAGTGCTTCGAAAGCAGCAACAACAACAAGCACCACTAATCACTTGGCTCACATAAATTATGGGGTTTCTTTGCTTGATGTGTCATCGGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATTCGGGAGACAAGGATCATCATGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCTCTTTGTCCTCCTCTTGTTCGCCTCTGTGTTCTTCTTCTTCTTCTTTCACTTCTTCTCCTACACCCTACTTTGCCGCCGCGGCAGGTAGCCCGGATCCCATGTCCTATTTGAGCTCCGGTGGGACCACCGCTGCGGCGGCGGCGGCTTATAGGGCTGCCACGGCCACAAGGTTTAATGGAATTTCTGGGGAGAGCTTCAAATCCCATCATCCATTGCACCAGCATCACTCATCATCACACTATGGGGTTGGACTTGGAGGGTCTCATGAGGCCTCTTCGGGGTTGATGAGATCAAGGTTTTTGCCCAAGTTGCCAACAAAGAGAAGCATGAGAGCACCGAGAATGCGGTGGACAAGCACACTACACGCTCGATTTGTCCATGCTGTGGAGCTTCTTGGTGGCCATGAAAGAGCTACACCGAAGTCAGTTCTAGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATAGAACTGTGAAGACCACTGACAAGCCTGCTGCTGCTTCTTCAGGCCTTTCAGATGGATCAGGAGAAGATGACATGTCTCCAATGGGAAGCAGCGGTGGAATGCGTCAATTTTCAGATCAAAGAAGCCTTTCAGATCGAGCAGTGCAACAAGATATGGATTACTCTTCCGCCAATACTCTATGGAGTAACTCTTCAAGCAATAGAGAAGCATGGCCACAAAACAGTTCTAACGACATAAATGGTTTCCGACCCCCGATCTTCCAGTCACAACAAATATCAGGAGGGCATCAAATTCAGGATTGTGATTCAAGCCAACTGAAGAACAGCTTGTCAGGATCATCAAATTTAGAATGCAAGAACCCAAGCTTGGAGTTCACATTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1449 0.4748 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNTTSGGATHYEAHNSTSANFASPAHTELSLGRNFSGGGRGGIQERPPHNSNPYYQTQQAHFHHLQNHSSTGSASKAATTTSTTNHLAHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPMEHSGDKDHHAKMCLYHHMPTYPSLSSSCSPLCSSSSSFTSSPTPYFAAAAGSPDPMSYLSSGGTTAAAAAAYRAATATRFNGISGESFKSHHPLHQHHSSSHYGVGLGGSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRSLSDRAVQQDMDYSSANTLWSNSSSNREAWPQNSSNDINGFRPPIFQSQQISGGHQIQDCDSSQLKNSLSGSSNLECKNPSLEFTLGRPDWNGKGQA* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2356 482 MobiDBLite consensus disorder prediction 350 482 - -
Pvu1g2356 482 MobiDBLite consensus disorder prediction 64 90 - -
Pvu1g2356 482 MobiDBLite consensus disorder prediction 1 36 - -
Pvu1g2356 482 Gene3D - 292 349 - -
Pvu1g2356 482 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 482 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pvu1g2356 482 MobiDBLite consensus disorder prediction 8 36 - -
Pvu1g2356 482 SUPERFAMILY Homeodomain-like 290 346 IPR009057 -
Pvu1g2356 482 MobiDBLite consensus disorder prediction 375 465 - -
Pvu1g2356 482 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 293 346 IPR006447 GO:0003677
Pvu1g2356 482 MobiDBLite consensus disorder prediction 247 270 - -
Pvu1g2356 482 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2356 Pvu-Chr1 48935004 48941647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2356 1 479 G2-like Transcription Factor Family AT5G16560 38.538 1.56e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu1g2356 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2356 - - ccaj:109796302 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2356 1 48935004 48941647 Pvu8g2472 8 55324221 55326586 PCT