Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2348 ATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCACGGTCGTTTTCAATGAAGAAAGGAAGAAAGAATGAGAAATGCGGAGGGAGGGAAGCTGCCGAAGCAATGGCAAAGGTGGCTAAGAAGAATGAGATGATGCTGTGTAGCTCTGGCACAGTTCATGTCGATGGTTCAAACAACTTTGCCTCCGTATTCTCCAAAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACATGATCTTCTGTGGGATTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAAAGTAAGAGAGTCAATGCCATCATCTTTGCTATGCAACTGGCAAGAGACGCTAGCCCAAACTTCAGTTGATCCTGGTATTGATGTAGAGGAAGGAAAAAAGCAACTATACCGATTCAACGTATGGAAGCACTCTTACTTGAAGACTTGTGCGGCCATTGATCAAGAACTGAAGCAGTACCGCAAGATAGACTCATTTTACAGCGGAACAACTGCCCTATCCATTGTTAGACAGGGTGAACTCATTGTGATAGCAAATGTTGGAGATTCTCGTGCTGTGTTGGCTACAACATCAGATGATGGAAGTTTGGTAGCGGTTCAGCTAACAGTTGATTTCAAGCCCAATTTACCCCAGGAGGCAGAGAGAATAATTGAGTGCCAGGGGCGTGTGTTCTGCCTAGAGGACGAGCCAGGAGTGCATAGGGTGTGGTTGCCGGATGCAGAGTCTCCAGGACTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGCCTAATTTCTGTGCCTGAGGTAACACACAGAAATATAAGTAGCAGAGACCAGTTTGTTGTGGCAGCCACTGATGGGGTTTGGGATGTAATATCTAACAAAGAAGCAGTGGAAATTGTATCTTCAACACCAGATAAAGCTAAGGCAGCTAAACGGTTGGTAGAGTGTGCAGAAGATGCATGGAAACGGAAGAGACGGGGCATTGCCGTGGATGACATTTCAGCAATTTGTCTTTTCTTTCACTCTTTCCTTTAA 1074 0.46 MGHFSSMFNGLARSFSMKKGRKNEKCGGREAAEAMAKVAKKNEMMLCSSGTVHVDGSNNFASVFSKRGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAQTSVDPGIDVEEGKKQLYRFNVWKHSYLKTCAAIDQELKQYRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATTSDDGSLVAVQLTVDFKPNLPQEAERIIECQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRNISSRDQFVVAATDGVWDVISNKEAVEIVSSTPDKAKAAKRLVECAEDAWKRKRRGIAVDDISAICLFFHSFL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2348 357 SMART PP2C_4 51 351 IPR001932 -
Pvu1g2348 357 CDD PP2Cc 59 353 IPR001932 -
Pvu1g2348 357 Gene3D - 51 355 IPR036457 -
Pvu1g2348 357 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 355 - -
Pvu1g2348 357 PANTHER ALPHABET, ISOFORM E-RELATED 1 355 - -
Pvu1g2348 357 SUPERFAMILY PP2C-like 51 354 IPR036457 -
Pvu1g2348 357 Pfam Protein phosphatase 2C 75 329 IPR001932 -
Pvu1g2348 357 ProSiteProfiles PPM-type phosphatase domain profile. 60 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2348 Pvu-Chr1 48854942 48858097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2348 1 354 PP2C-type Phosphatase Gene Family AT3G05640 72.753 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2348 - - vra:106757085 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2348 1 48854942 48858097 Pvu1g2348 1 48854942 48858097 ECH
Pvu1g2348 1 48854942 48858097 Pvu7g2045 7 43853546 43856808 PCT