Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2345 ATGAGTAGGACTGAATTATCGAGGACGAAGCCACCGCCGGTTCCATTGGGGACTCTGATTGGCCGTGAGATTCGAAATGGAAAAGTTGAAAAACCTTTCGTGAAGTATGGACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCTCAGGGTTCCGGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGATCTTTGATGGGCATAACGGGATATCAGCTGCTATTTTTGCAAAGGAAAACTTGCTAAGTAATGTTTTGAGTGCAATACCCCAAGATATTAGCAGGGATGCATGGCTTCAGGCCCTTCCTCGCGCACTGGTTGTTGGCTTTGTGAAGACTGACATAGAGTTTCAGCAAAAGGGAGAAACTTCCGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTATAACTGTCGCATCTGTTGGGGATTCACGCTGCATATTAGATACTCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGATTGGAAGAGAATGCAGAAGAAAGGGAGCGTGTGACTGCCAGTGGCGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAACGAGGTTGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTATCTAGATCAATTGGTGACACAGACGTGGGAGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGACTTGTGATAGCCTCTGATGGTATTTGGGATGCTTTATCATCTGATATGGCTGCCCAGTCATGTCGGGGTCTACCTGCAGAGCTTGCTGCAAAACTAGTGGTTAAGGAAGCTCTAAGGTCAAGAGGCCTCAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCGGACCTCCCTGTGCTACCACCAACTCCAAGAAAGAAACACAATATGCTAACTTCGCTTCTATATTTTGGAAAAAGAACTGAGAACTCTGTAAACAAAGCTACCAATAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACCGAAAGGCTAGGTAAGGATTTTCCGCTTAATAAGAATTCTGGTATTTTTCGCTGTGCGGTTTGCCAAGTGGATCAACCCCCCGGTGATAGCTTGTCGGTGAATTCTGGACCTTTTTTCTCTCCTGCATCTAACCCATGGGAAGGCCCATTACTCTGCACAAACTGTCGGAAGAAGAAAGATGCCATGGAAGGAAAGAGGCCGAGCAGAACCACCGTTATAGCATAG 1290 0.4589 MSRTELSRTKPPPVPLGTLIGREIRNGKVEKPFVKYGQAGLAKKGEDYFLIKTDCLRVPGDASTAFSVFAIFDGHNGISAAIFAKENLLSNVLSAIPQDISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLVDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLVIASDGIWDALSSDMAAQSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVLPPTPRKKHNMLTSLLYFGKRTENSVNKATNKLSAVGVVEELFEEGSAMLTERLGKDFPLNKNSGIFRCAVCQVDQPPGDSLSVNSGPFFSPASNPWEGPLLCTNCRKKKDAMEGKRPSRTTVIA* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2345 429 CDD PP2Cc 43 297 IPR001932 -
Pvu1g2345 429 Gene3D - 33 301 IPR036457 -
Pvu1g2345 429 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 428 - -
Pvu1g2345 429 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Pvu1g2345 429 SMART PP2C_SIG_2 50 297 IPR001932 -
Pvu1g2345 429 Pfam Protein phosphatase 2C 63 281 IPR001932 -
Pvu1g2345 429 PANTHER ALPHABET, ISOFORM E-RELATED 2 428 - -
Pvu1g2345 429 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
Pvu1g2345 429 SMART PP2C_4 23 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2345 Pvu-Chr1 48825991 48829437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2345 1 427 PP2C-type Phosphatase Gene Family AT1G09160 76.815 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2345 - - gmx:100807886 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2345 1 48825991 48829437 Pvu1g2345 1 48825991 48829437 ECH
Pvu1g2345 1 48825991 48829437 Pvu7g2049 7 43915287 43918670 PCT