Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2342 ATGATGGATCTGAAGGAATGGTCGTCTTCAGAGCTCAACCAAAACAAGAAATGCTGCGCTGATTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCCGGACCCAAGACTCTGTGCAACGCCTGCGGAATCCGGTACCGGAAGAGAGGGAGTTGCTCCAGAAAGAGAGAGGAGGTGGTGGTGTTGCACCGGACATCCTCTGTTGTTAAGAAACAGAGCTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCGGTGTGTTTGATGGCCTTGTCCTGCGGTTTTTTACCATTCCTTCACTTGCCACATTCCAGGTAA 321 0.5234 MMDLKEWSSSELNQNKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGSCSRKREEVVVLHRTSSVVKKQSWKMLGEEEQAAVCLMALSCGFLPFLHLPHSR* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2342 106 SMART GATA_3 13 64 IPR000679 GO:0006355|GO:0043565
Pvu1g2342 106 Gene3D - 13 78 IPR013088 GO:0006355|GO:0008270
Pvu1g2342 106 PANTHER OS01G0976800 PROTEIN 60 96 - -
Pvu1g2342 106 PANTHER OS01G0976800 PROTEIN 9 52 - -
Pvu1g2342 106 CDD ZnF_GATA 19 54 IPR000679 GO:0006355|GO:0043565
Pvu1g2342 106 ProSiteProfiles GATA-type zinc finger domain profile. 13 52 IPR000679 GO:0006355|GO:0043565
Pvu1g2342 106 Pfam GATA zinc finger 19 53 IPR000679 GO:0006355|GO:0043565
Pvu1g2342 106 ProSitePatterns GATA-type zinc finger domain. 19 44 IPR000679 GO:0006355|GO:0043565
Pvu1g2342 106 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 16 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2342 Pvu-Chr1 48807779 48808710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2342 3 95 C2C2-Gata Transcription Factor Family AT5G49300 49.565 2.60e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu1g2342 GATA 4.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2342 - - pvu:PHAVU_001G226500g 223.787