Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2341 ATGTCGTATAAGCCAACCGCGAACTCGAGGATCGAGGTTCGTCGGATCCGTTACAAAGTCGCCGTGGACGCCGATGAAGGTCGGCGGCGGCGAGAGGATACGATGGTGGAGATTCGAAAGAACCGCAGGGAGGAGAGCCTGCAGAAGAAGAGACGCGAGGGTCTCCAATCGCAGCAGATTCCAGCGTCAGCTCACTCTACTTTAATAGAGAAGAAGTTGGAACTCCTACCAGCCATGGTTGCAGGTGTTTGGACTAATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGATGCTTTCAATTGAACGTAGCCCACCCATTGAGGAGGTTATTCAAGCCGGTGTAGTTCCACGCTTTGTTGAATTTTTGATGAGGGAAGATTTTCCAATGCTTCAGTTTGAGGCAGCTTGGGCTTTGACCAATATAGCTTCTGGAACATCTGAAAACACTAAAGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTTCAGCTCCTTGCTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCTCCTAAATGCCGAGATCTTGTTCTCGGTCATGGAGCATTGCTTCCTCTATTGGCACAACTGAATGAGCATGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTCTCAAATTTCTGCAGGGGAAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCTGCTCTTGCCAATCTTATCCATTCAAATGATGATGAAGTCTTGACTGATGCTTGCTGGGCACTGTCATATCTTTCTGATGGTGCAAATGACAAAATTCAGGGTGTAATTGAAACTGGTGTTTGTAGCCGGCTTGTTGAGCTTCTAACGCACACATCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAACATTGTCACTGGAGATGATAAGCAGACCCAGGTCATCATCAACCATCAAGTTCTTCCTCATCTTTTGAATCTCTTGACCAAAAATTATAAAAAAAGCATTAAGAAGGAAGCTTGCTGGACAATATCGAACATCACAGCTGGGAACAAACAACAGATTCAGGATGTAATTGATGCTGGTCTAATTGCTCCTCTAGTCCATTTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGATCTCACGAACAAGTCAAGTTCCTTGTAAGTCAAGGATGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGTCTTGAAAACATCTTGAAGGTAGGAGAATCTGAGAAAAACGTTAGTAATGCTGATGGTGTGAATCTATATGGCGCAATGATTGATGATGTTGAGGGGTTAGAGAAAATTGAGAACCTCCAGAGTCATGATAACACTGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATACTGGATGGAGGAAGATGATGAAACTGTGCCTCCAGGGGATGCTTCTCAGGGGTTTAACTTTGGTGGCCATAAATTTCCTTCAGTGCCTTCTGGTGGATTCAACTTTAATTAA 1596 0.4405 MSYKPTANSRIEVRRIRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQIPASAHSTLIEKKLELLPAMVAGVWTNDNNMQFEATTQFRKMLSIERSPPIEEVIQAGVVPRFVEFLMREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAVWALGNVAGDSPKCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALANLIHSNDDEVLTDACWALSYLSDGANDKIQGVIETGVCSRLVELLTHTSPSVLIPALRTVGNIVTGDDKQTQVIINHQVLPHLLNLLTKNYKKSIKKEACWTISNITAGNKQQIQDVIDAGLIAPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQVKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGESEKNVSNADGVNLYGAMIDDVEGLEKIENLQSHDNTEIYEKAVKILETYWMEEDDETVPPGDASQGFNFGGHKFPSVPSGGFNFN* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2341 531 Pfam Atypical Arm repeat 458 503 IPR032413 -
Pvu1g2341 531 PIRSF Importin_alpha 5 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pvu1g2341 531 SMART arm_5 360 400 IPR000225 GO:0005515
Pvu1g2341 531 SMART arm_5 149 189 IPR000225 GO:0005515
Pvu1g2341 531 SMART arm_5 317 358 IPR000225 GO:0005515
Pvu1g2341 531 SMART arm_5 275 315 IPR000225 GO:0005515
Pvu1g2341 531 SMART arm_5 234 273 IPR000225 GO:0005515
Pvu1g2341 531 SMART arm_5 403 443 IPR000225 GO:0005515
Pvu1g2341 531 SMART arm_5 191 232 IPR000225 GO:0005515
Pvu1g2341 531 SMART arm_5 106 147 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Pvu1g2341 531 PANTHER IMPORTIN SUBUNIT ALPHA 4 521 - -
Pvu1g2341 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Pvu1g2341 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 272 IPR000225 GO:0005515
Pvu1g2341 531 MobiDBLite consensus disorder prediction 40 59 - -
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 282 314 IPR000225 GO:0005515
Pvu1g2341 531 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Pvu1g2341 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Pvu1g2341 531 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Pvu1g2341 531 PANTHER IMPORTIN ALPHA 4 521 - -
Pvu1g2341 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Pvu1g2341 531 Gene3D - 75 497 IPR011989 -
Pvu1g2341 531 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Pvu1g2341 531 Gene3D - 13 52 IPR036975 GO:0006606
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2341 Pvu-Chr1 48795703 48801991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2341 132 413 U-box Gene Family AT3G46510 23.404 3.48e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2341 K15042 - gmx:100806288 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2341 1 48795703 48801991 Pvu7g2057 7 43954342 43959212 ECH
Pvu7g2057 7 43954342 43959212 Pvu1g2341 1 48795703 48801991 ECH
Pvu9g2619 9 36613426 36618617 Pvu1g2341 1 48795703 48801991 ECH
Pvu1g2341 1 48795703 48801991 Pvu1g2341 1 48795703 48801991 ECH
Pvu1g2341 1 48795703 48801991 Pvu7g2057 7 43954342 43959212 PCT