Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2340 ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGCAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGCGGTGGCACCCGGACAAGTGGGCTCGGAATCCCGCAACCGCCGGAGAAGCCAAACGGCGGTTTCAGCAAATCCAAGAAGCTTACTCAGTTCTCTCCGACCAGTCTAAAAGATCAATGTACGATGCTGGGCTCTACGATCCTTTGGAGGAAGAAGACGAAGAGTTTTGTGATTTCATGCAAGAGATGATATCGATGATGAACAATGTGAAAGACGAGGGGGACAGTATGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGGTGATGGGATCGGCATTGACTTGAGCCAGGATCAGATGGCTGGGAAGCGAGGACGGGTCAACGGATCAAGAGGCAATGCGGCCAAGCGCAGCAACTCTCGCTCATAG 483 0.5383 MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWARNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDEEFCDFMQEMISMMNNVKDEGDSMEDLQRMFVEMVGGDGIGIDLSQDQMAGKRGRVNGSRGNAAKRSNSRS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2340 160 Pfam DnaJ domain 13 78 IPR001623 -
Pvu1g2340 160 MobiDBLite consensus disorder prediction 134 160 - -
Pvu1g2340 160 PANTHER PUTATIVE, EXPRESSED-RELATED 9 144 - -
Pvu1g2340 160 PRINTS DnaJ domain signature 14 32 IPR001623 -
Pvu1g2340 160 PRINTS DnaJ domain signature 32 47 IPR001623 -
Pvu1g2340 160 PRINTS DnaJ domain signature 53 73 IPR001623 -
Pvu1g2340 160 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Pvu1g2340 160 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Pvu1g2340 160 Gene3D DnaJ domain 2 103 IPR036869 -
Pvu1g2340 160 PANTHER PUTATIVE, EXPRESSED-RELATED 9 144 - -
Pvu1g2340 160 SMART dnaj_3 11 73 IPR001623 -
Pvu1g2340 160 CDD DnaJ 12 70 IPR001623 -
Pvu1g2340 160 SUPERFAMILY Chaperone J-domain 12 84 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2340 Pvu-Chr1 48791289 48792608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2340 12 79 C2H2 Transcription Factor Family AT1G74250 43.478 5.28e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2340 - - gmx:548049 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2340 1 48791289 48792608 Pvu1g2340 1 48791289 48792608 ECH