Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2332 ATGTCTAACACCAGTAACAATGTCGCTGGGGTTGACAACACATTCAGAAGAAAATTTGATCGAGAAGAGTACCTGGAACGAGCACGGGAGCGCGAGAGACAGGAGGAGGAGGGTCGATCGAAACCTAAAGCTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAGCACAGAGATTATGAAGTGGACCTTGAATCTCGCTTGGGCAAGACTCAGGTTGTTACACCGGTTGCACCACTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAATGTGTGGTTAAGGACTCGGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCCTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCAAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAACGAAAAGATGTTGGTAGCTTCACTGAACAAGATCTTGATGAGCGGATTTTGAAACAACAACAAGAAGAGGAAGAAAAAAAGCGTCTACGAAGAGAAAAGAAGAAAGAAAAGAAGGAGAAGGCAGTGGAAGAACCTGAAATCGATCCGGATGTTGCTGCCATGATGGGTTTTGGAGGTTTCCGGTCATCCAAAAAGTGA 606 0.4521 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRSKPKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLKQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEEKKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSKK* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2332 201 SUPERFAMILY beta-beta-alpha zinc fingers 80 123 IPR036236 -
Pvu1g2332 201 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Pvu1g2332 201 Coils Coil 148 180 - -
Pvu1g2332 201 MobiDBLite consensus disorder prediction 157 201 - -
Pvu1g2332 201 MobiDBLite consensus disorder prediction 20 44 - -
Pvu1g2332 201 Gene3D Classic Zinc Finger 79 117 - -
Pvu1g2332 201 Pfam Zinc-finger of C2H2 type 85 109 - -
Pvu1g2332 201 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 3 201 IPR040107 GO:0000398|GO:0005681
Pvu1g2332 201 MobiDBLite consensus disorder prediction 20 56 - -
Pvu1g2332 201 MobiDBLite consensus disorder prediction 157 183 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2332 4 147 C2H2 Transcription Factor Family AT3G05760 81.250 1.25e-84 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g2332 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2332 K12848 - gmx:100527057 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2332 1 48718730 48721869 Pvu1g2332 1 48718730 48721869 ECH