Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2326 ATGGAACCACTTTACAGGTTCAAACCTCTTCTCCCTTCGCGTCTCCGAACAACACCTAATTCTTACCTCCAGCTAGAAGCTCCTCAACCCGACGTAACCGACTCAGGTATGACGGATCGGATCATCAAGATCCAGATCGCCAATCATCCTCTTTATCCAGATTTACTCTCTGCATACCTAGAATGCCAAAAGGTTGGAGCGCCGCCAGAACTGGCATGTCTTCTTGAAGAAATAGGCCGAGAAAGCCGCCGCATGAATGCTCGCCTTGAGAAAGGGGACGGCCCTGAACTTGACCACTTCATGGAAATGTACTGCGATTTGCTTCGTAGATACAAGGAGGAGTTGTCCAGACCCTTCAATGAAGCGACTTTGTTTCTGGGAAACATGGAATCACAACTAAGCAACCTTTGTAATGGAACACTGGCAAAGTCATCAGATAACAACCGCTCTGATGAAGTAGCTGGTGGAGCATCAGAGGAAGAAAGAAGTTGTGGAGAGATGGAAGAAGTTGAAGGTGATCAAAATCTTAAAGAGATGCTCCTTCGCAAATATAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTAAAACGGAGAAAAAAGGGTAAGCTACCAAAGGATGCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAATTATCAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAGCTGAGGACATGCGATTTGCCGTTATGGATGGGTTAAGTGGCGGCGGTGGCGTCATAGGAGGAGCTATGTTCTTTTAG 852 0.4601 MEPLYRFKPLLPSRLRTTPNSYLQLEAPQPDVTDSGMTDRIIKIQIANHPLYPDLLSAYLECQKVGAPPELACLLEEIGRESRRMNARLEKGDGPELDHFMEMYCDLLRRYKEELSRPFNEATLFLGNMESQLSNLCNGTLAKSSDNNRSDEVAGGASEEERSCGEMEEVEGDQNLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDAKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPAEDMRFAVMDGLSGGGGVIGGAMFF* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2326 283 Pfam ELK domain 176 196 IPR005539 GO:0003677
Pvu1g2326 283 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 269 - -
Pvu1g2326 283 SMART HOX_1 197 262 IPR001356 GO:0003677
Pvu1g2326 283 MobiDBLite consensus disorder prediction 153 170 - -
Pvu1g2326 283 ProSiteProfiles 'Homeobox' domain profile. 195 258 IPR001356 GO:0003677
Pvu1g2326 283 CDD homeodomain 198 258 IPR001356 GO:0003677
Pvu1g2326 283 ProSiteProfiles ELK domain profile. 175 195 IPR005539 GO:0003677
Pvu1g2326 283 SMART ELK_2 175 196 IPR005539 GO:0003677
Pvu1g2326 283 Pfam KNOX2 domain 92 137 IPR005541 GO:0003677|GO:0005634
Pvu1g2326 283 SMART KNOX2_2 87 138 IPR005541 GO:0003677|GO:0005634
Pvu1g2326 283 Gene3D - 193 266 - -
Pvu1g2326 283 SMART KNOX1_2 40 84 IPR005540 GO:0003677|GO:0005634
Pvu1g2326 283 SUPERFAMILY Homeodomain-like 197 270 IPR009057 -
Pvu1g2326 283 Pfam Homeobox KN domain 215 254 IPR008422 GO:0003677|GO:0006355
Pvu1g2326 283 ProSitePatterns 'Homeobox' domain signature. 233 256 IPR017970 GO:0000981|GO:0006355
Pvu1g2326 283 MobiDBLite consensus disorder prediction 140 170 - -
Pvu1g2326 283 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 36 269 - -
Pvu1g2326 283 Pfam KNOX1 domain 42 82 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2326 Pvu-Chr1 48669744 48675615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2326 27 273 Homeobox Transcription Factor Family AT1G23380 53.282 9.41e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pvu1g2326 KNOX2 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2326 - - gmx:100803095 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2326 1 48669744 48675615 Pvu1g2326 1 48669744 48675615 ECH
Pvu1g2326 1 48669744 48675615 Pvu7g2073 7 44065734 44069963 PCT