Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2321 ATGTCTCTGCGACCTGGTTCTAGTTCTGGTTCTTCTTGGAAGGCGAGGAAGAAAAGTTACAAGACTGGGATTAACGCGGAAGACAGTAGGAGAAGGAGGGTTGAAGACCTCGTGAGCATCAGAAAAATCAAACGCCAAACCACTCTTCTCAACAAACGAGAAGAGAAACACTCCTGCGATACGGTGTCGGAAGCTGTTCCTGAGATAGTGAAACGTTTATGTGATGAGTACCCTCATAAGCAATTGGAGGCAACTGCTCACTTAAGAACTATGTTAACACTTGGTGATCAGGCCCCTCCAGTTGATGAGGTCGTTAAGAATGGTATTCTCCCTCGCTTTGTGGAGTTATTGTCAAGAGACGACGCACCCCAATTGCAGATAGAAGTTCTGTGGATTTTATCTAATTTTGCTTCCGGAACATCCCAACACAAAAGTGCTGTCGTTGAACTTGGTGTTATTCCAATCTTGGTCAATCTTCTCTCTAGTACCGATGGGGATACCAGAGAAGAGGCAGTATGCCTTTTAGGGAACATTGTTGCTGATTCCCCAGACCATAGGGATCTTGCTCTTAACCATGGTGCTCTCAAGCCATTATTATGTCAGTTGCAGCCACATTCAACATTGTATATGTTGAGAAATGCTACGTGGTGTTTATCTGTTTTGTTCCTTGGAATGCCTCCAGTAAACTTTGAACAGGTAAAGATTGCCTTACCTGCTCTTCAACAACTCGTCCACGCGACCGATGAGGAAGTTTTAACCGATACATGCTGGGCTCTGGCTTACCTTTCGGAAGGTCAAATTGGCAAAAGTCAAGCTATTGTTGAACTAGGAGTTTGCCCAAGACTTGTGCAACTTCTTCAGCATCCATCGCATTCAGTTATTATACCTGCGCTTCAGGCTCTAGGAAATATTGCTGCTGGTGATGAGGCTCAGGCACAGTTTTTGATTGATAACCAATTGCTTCCGTGTCTTCACCAACTTCTTACGCGTGAATACACAAAATCCATCTTTAAAGAAGCTTGTTGGACAATCGCAAATATCACAGCTGGGACTCGAGCTCAAATACAGGCTGTGTTTGATGCCAATATTATTCCTCCTCTTGTTCAAATTCTCCATACTGCTGAGTTTGAGGTCAAGAGGGAGGCTGTCTGCGCGATCTACAATGTCACTTCTAAAGGATCTTATGACAATGTCAGGTCCCTTGCGGCTGTGGGTTGTATTGAGGCAGTATGTGAGCTCTTGACCTGTCCAGACCCAAAGATGGTGACACTTTGTCTGGAAGGGCTGGTGAACATTTTGGCAGTTGGAGAAGCTGACAAGGATGAGAACGGCAATATTTTTGCTAAAAGGGTTGAGGAATGTGGAGGATTGGAGAAGATTGAAACGTTGCAGATCCATGACAACAATGAGGTTCATACGAGAGCTTTGTGGATTTCTGATCTCTTTCGGGCAGAGAATGAGTTGGAAGATACGGATATGTGCGTGAGCCTGCTTGATTTTTCACTCGGAGTTAACAAACCCAAGTCATCATCATCATCTTCATCATCTTACATGCGTTGA 1560 0.4442 MSLRPGSSSGSSWKARKKSYKTGINAEDSRRRRVEDLVSIRKIKRQTTLLNKREEKHSCDTVSEAVPEIVKRLCDEYPHKQLEATAHLRTMLTLGDQAPPVDEVVKNGILPRFVELLSRDDAPQLQIEVLWILSNFASGTSQHKSAVVELGVIPILVNLLSSTDGDTREEAVCLLGNIVADSPDHRDLALNHGALKPLLCQLQPHSTLYMLRNATWCLSVLFLGMPPVNFEQVKIALPALQQLVHATDEEVLTDTCWALAYLSEGQIGKSQAIVELGVCPRLVQLLQHPSHSVIIPALQALGNIAAGDEAQAQFLIDNQLLPCLHQLLTREYTKSIFKEACWTIANITAGTRAQIQAVFDANIIPPLVQILHTAEFEVKREAVCAIYNVTSKGSYDNVRSLAAVGCIEAVCELLTCPDPKMVTLCLEGLVNILAVGEADKDENGNIFAKRVEECGGLEKIETLQIHDNNEVHTRALWISDLFRAENELEDTDMCVSLLDFSLGVNKPKSSSSSSSSYMR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2321 519 Pfam Importin beta binding domain 16 85 IPR002652 GO:0006606|GO:0061608
Pvu1g2321 519 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 390 IPR000225 GO:0005515
Pvu1g2321 519 Pfam Armadillo/beta-catenin-like repeat 141 179 IPR000225 GO:0005515
Pvu1g2321 519 Pfam Armadillo/beta-catenin-like repeat 99 137 IPR000225 GO:0005515
Pvu1g2321 519 Pfam Armadillo/beta-catenin-like repeat 271 306 IPR000225 GO:0005515
Pvu1g2321 519 Pfam Armadillo/beta-catenin-like repeat 353 390 IPR000225 GO:0005515
Pvu1g2321 519 Pfam Armadillo/beta-catenin-like repeat 182 221 IPR000225 GO:0005515
Pvu1g2321 519 Gene3D - 14 54 IPR036975 GO:0006606
Pvu1g2321 519 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 277 309 IPR000225 GO:0005515
Pvu1g2321 519 Gene3D - 64 482 IPR011989 -
Pvu1g2321 519 MobiDBLite consensus disorder prediction 1 18 - -
Pvu1g2321 519 PANTHER IMPORTIN SUBUNIT ALPHA-4 3 490 - -
Pvu1g2321 519 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 108 151 IPR000225 GO:0005515
Pvu1g2321 519 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 151 193 IPR000225 GO:0005515
Pvu1g2321 519 MobiDBLite consensus disorder prediction 1 26 - -
Pvu1g2321 519 ProSiteProfiles IBB domain profile. 1 62 IPR002652 GO:0006606|GO:0061608
Pvu1g2321 519 PANTHER IMPORTIN ALPHA 3 490 - -
Pvu1g2321 519 Pfam Atypical Arm repeat 445 478 IPR032413 -
Pvu1g2321 519 SMART arm_5 182 223 IPR000225 GO:0005515
Pvu1g2321 519 SMART arm_5 226 264 IPR000225 GO:0005515
Pvu1g2321 519 SMART arm_5 308 349 IPR000225 GO:0005515
Pvu1g2321 519 SMART arm_5 140 180 IPR000225 GO:0005515
Pvu1g2321 519 SMART arm_5 394 434 IPR000225 GO:0005515
Pvu1g2321 519 SMART arm_5 96 138 IPR000225 GO:0005515
Pvu1g2321 519 SMART arm_5 265 306 IPR000225 GO:0005515
Pvu1g2321 519 SMART arm_5 351 391 IPR000225 GO:0005515
Pvu1g2321 519 PIRSF Importin_alpha 7 499 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pvu1g2321 519 SUPERFAMILY ARM repeat 13 482 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2321 Pvu-Chr1 48608761 48614425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2321 149 414 U-box Gene Family AT1G23030 26.182 2.97e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2321 K15042 - gmx:100793195 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2321 1 48608761 48614425 Pvu1g2321 1 48608761 48614425 ECH