Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2302 ATGGGGTCTAGTCTTAGTGCTGAATTATCCAAGGAAACTCCTATTTTTGGTCTCAAAGTTTGGGAAATAATTGGAATTGTAGTTGGTTTGTCAATAATAGTTATTCTTTCTGTGGTCTCACTTTGCCTCACGTCAAGGAAGAAATCTGGAAAAGAGAAAGACAGGATTCCCCTAAGTCAAATACCAATTGTCTCGAAGGAAATCAAGGAAGTGCGGGTTGAACAAGTGCCAACTAATGCATTTGCTCCTCGTGATGGAATACTTCTCACAATTCGGGACAAGTCCAGTGGCAAGGAATCAGACAATGTCATGGTTCATTTAGGTCTGGGGAAGATGAAGAATGGAAATAGCAACACTCACTCAGATTCATTTCGTTACACAGAGAAAGATGGAAGCGGTTCACACTCACAGTCCGGAGAAGAAGGTAGCTCTGGCACGTTTACAGTGTACAAGCAATCTTCTTCACACCCTATAACAGCTCCCTCACCTCTATCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAGCTTGCCACTAACCGTTTTTCCAAAGAAAATGTCCTCGGTGAAGGTGGGTATGGAGTAGTTTATAGGGGGCAGTTGGTCAATGGAACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGCCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAACTTGGTTCGCCTTTTGGGGTTCTGCGTTGAGGGAACCCACAGGATGTTGGTTTATGAGTATGTTAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGCCACCATGGATACCTTACCTGGGAAGCACGTATCAAGATTCTGCTTGGCACAGCCAAAGCGCTAGCATATTTGCATGAAGCAATTGAGCCGAAGGTGGTACACCGTGATATCAAGTCAAGCAACATATTAATTGATGATGATTTCAATGCCAAGGTTTCAGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTTATATCACCACAAGAGTTATGGGAACTTTTGGATACGTGGCTCCTGAATATGCAAATACTGGGCTTCTAAATGAGAAGAGTGATGTCTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGATCCAGTTGACTATGGTCGACCAGCAAATGAAGTGAACCTGGTTGATTGGCTGAAGATGATGGTTGGAAATAGGAGATCAGAAGAAGTGGCGGACCCCAACATTGAGGTGAAGCCATCCACTAGAGCCTTAAAACGGGCTCTCTTAACGGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTCGTTCGTATGCTGGAGTCAGAGGAATATCCTTTACTAAGAGAGGACCGAAGACACCGAAGAAGAAATAGAGGGGGTAGTGGAGAAATGGAGTCTCAGAAGGAGTATTCTGACACAGACAGGAGTGAGATTCAGGATTCCAGAGAAGAAAGAAGAGGGTGA 1533 0.4403 MGSSLSAELSKETPIFGLKVWEIIGIVVGLSIIVILSVVSLCLTSRKKSGKEKDRIPLSQIPIVSKEIKEVRVEQVPTNAFAPRDGILLTIRDKSSGKESDNVMVHLGLGKMKNGNSNTHSDSFRYTEKDGSGSHSQSGEEGSSGTFTVYKQSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLVNGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSYITTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEVNLVDWLKMMVGNRRSEEVADPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPLLREDRRHRRRNRGGSGEMESQKEYSDTDRSEIQDSREERRG* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2302 510 MobiDBLite consensus disorder prediction 130 160 - -
Pvu1g2302 510 Pfam Protein kinase domain 192 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2302 510 MobiDBLite consensus disorder prediction 469 510 - -
Pvu1g2302 510 SUPERFAMILY Protein kinase-like (PK-like) 175 470 IPR011009 -
Pvu1g2302 510 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2302 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Pvu1g2302 510 SMART serkin_6 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2302 510 CDD STKc_IRAK 197 463 - -
Pvu1g2302 510 PANTHER OS01G0323000 PROTEIN 3 508 - -
Pvu1g2302 510 Gene3D Phosphorylase Kinase; domain 1 172 266 - -
Pvu1g2302 510 MobiDBLite consensus disorder prediction 111 160 - -
Pvu1g2302 510 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 508 - -
Pvu1g2302 510 Gene3D Transferase(Phosphotransferase) domain 1 267 478 - -
Pvu1g2302 510 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2302 Pvu-Chr1 48489377 48494074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2302 116 465 Trihelix Transcription Factor Family AT1G70460 43.889 2.30e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pvu1g2302 Pkinase 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2302 - - gmx:100787014 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2302 1 48489377 48494074 Pvu8g2482 8 55405564 55413470 PCT
Pvu7g2102 7 44340949 44346110 Pvu1g2302 1 48489377 48494074 PCT