Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2290 ATGGGGAGACACTCTTGCTGCTACAAACAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCAGTTCCAAAACTAGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATTAATTACCTTAGGCCAGATTTGAAGAGAGGGGCGTTCTCACAGCAAGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCGCAGATCGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAGCCCCTCTATGAGGTTGAGAATGACAAGGACAAGCCTCTTACAGCTGACAGAAGCAACCAGAAAGCCTCCAATGAGGTGAGTGTTGTTGAGCCACCAAAACAAAAGCCAATAACTACTACTACTACTACTTCTATGCCTATGGATAGATATCCCCTTGAAGTTTCTCCTACCTCAAAGATCAGCAGTGGCAACAACAACAGCAGCAGCACCCTAGACAGGTTTGGCACCTGTCATGACAACAACAGCTCCATCACTAGTTCTGATATGATGGGAATGGGATATTTCCCTTTCCAGCACCTGAACTATGGACCAAACATGGGACTCACTACTGCCACCACCAACAACACCCCGCTTTGTTTCATTCCTAGTTCCACTTCTTCCCAAATGATGTCAGAGCTGAATTCCACCATGCTCCATTCTGTGTTCTCAACACATGTAAAGCCCACTGTTAGCCTCCAGTCTAATAACAACAACCCTTCATCCATATTCTCTGACGGGGTTCAGAACTGGGAAGGAAGTACCTTCAGTAATAACAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTAACTTCCTTGATCATGGCAGCACAATAACATGGGGGCTGCAGGCAGAATCTGCCACCAAGGCAGATAATAAAGATGCTCATTCTTCTCATGTGGTACCCTTGCAGTCAGAACAAGAAGACATCAAATGGTCTGAGTATCTGAACAACACCCCTTTTTTCCTGGGAACCACAGTGCAGCAGCATCAAACCACTCACTCTCTCTACAGTGATGAGGTGAAGCCAGAAACAGCCTTCATAGCAGACGAATCAAGTACCAGTTGGCACCACAGCCAGCATTTTCAACCCTCGGATATATATAGCAAAGATCTTCAGAGATTTTCAGTGGCCTTTGGACAAACCCTGTAA 1326 0.4578 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLYEVENDKDKPLTADRSNQKASNEVSVVEPPKQKPITTTTTTSMPMDRYPLEVSPTSKISSGNNNSSSTLDRFGTCHDNNSSITSSDMMGMGYFPFQHLNYGPNMGLTTATTNNTPLCFIPSSTSSQMMSELNSTMLHSVFSTHVKPTVSLQSNNNNPSSIFSDGVQNWEGSTFSNNNNNNASKSNGSSSCSIQLQSSTNFLDHGSTITWGLQAESATKADNKDAHSSHVVPLQSEQEDIKWSEYLNNTPFFLGTTVQQHQTTHSLYSDEVKPETAFIADESSTSWHHSQHFQPSDIYSKDLQRFSVAFGQTL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2290 441 MobiDBLite consensus disorder prediction 129 143 - -
Pvu1g2290 441 SMART sant 66 114 IPR001005 -
Pvu1g2290 441 SMART sant 13 63 IPR001005 -
Pvu1g2290 441 MobiDBLite consensus disorder prediction 144 175 - -
Pvu1g2290 441 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pvu1g2290 441 CDD SANT 17 61 IPR001005 -
Pvu1g2290 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pvu1g2290 441 Gene3D - 68 142 - -
Pvu1g2290 441 Gene3D - 11 67 - -
Pvu1g2290 441 MobiDBLite consensus disorder prediction 122 194 - -
Pvu1g2290 441 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu1g2290 441 PANTHER HOMEODOMAIN-RELATED 1 434 - -
Pvu1g2290 441 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu1g2290 441 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu1g2290 441 PANTHER MYB DOMAIN PROTEIN 55 1 434 - -
Pvu1g2290 441 CDD SANT 69 109 IPR001005 -
Pvu1g2290 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pvu1g2290 441 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2290 Pvu-Chr1 48387359 48389969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2290 1 441 MYB Transcription Factor Family AT1G09540 46.930 2.64e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g2290 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2290 K09422 - gmx:100788976 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2290 1 48387359 48389969 Pvu7g2121 7 44528170 44530209 PCT