Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2284 ATGGCGTGGCGCGAGCTTGGAAAGAAGAGAATATATATGAATTTTACTAGAGCTTTGACTGCAACGCCATTTAGGCATGTGACAGGATCAAATTTTGCATCCACCTTTGCTGCACAATCTGTTTATGCATCGGCAAAATGCTTGACAGATTTCATCAACCAATCATCTCAGGGCGTGGCTAGTTTGGGCACTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCACAAGTCTGGGCAAGAAGTGATGGACCATTAGGTCTGAAGACCCCAAAGAGGGTGAAATATGTGAGAAGGGATGATAGGAACCAGACACCTGTTAAAGCTCCTTATGGCCATTCTAATGTCACCGCTAAAAAACCAAATCCTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGACATCCTCACTAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGCATGGATGTTGCTGAATTGGCCGCAATGGAGGCTGGCATCAATGTTAAGAGACTACATTCAGCTGAAGGTTCTGAAATCTTACCTCGTTCTGCTGTTGTAACAGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGACGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATAACACAACATCTAGGTGCTTTTGTTGTGGTCATGCCATCGGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCGAAAGCAGCTAATGTTCCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTGCAGCTTGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATATTCAGGTTGTTGAAGTTTCAGCAACTAAAAAAATTGGACTGGATAACCTAGAGGAAGCCTTACTACTTCAGGCGGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAGGGACGGGGTCCATTGGTAACTACTATAGTAAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTCGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTGTTAAAGATATGGCAGGGAAGTTAACTCAACGAGCAACACCTGCTATGCCTGTTGAGATCGAAGGGCTCCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCAAGAATGCTTAGTTCTGGTAGGCAAAGGAAATATGAGGAAAACAGGCTAAAGAATAAGATGATAGAGGACAAACCAACTACTTCAGATGATTCCATGGAGGTTCCACTGAGGGTTGAACTGCCAGTGATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACTGATGCATTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTCCATGTTGGCGTTGGGCCACTTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCTCCTACTGCTCTAAGTCAGGCAGCAACTCGTGCCAGTATCAAGATAATTCTGCACCGTGTAATTTACCACCTCTTGGAGGAAATAGGCAAATTGATAATAGAGAAGGCCCCTGGGACTTCTGAAACCCAGGTTGCTGGACAGGCAGAAGTGCTCAACATCTTTGAAATCAAAGGGAGCAAGTCCAAGGGTCCTGATGTGAAGATAGCTGGTTGTCGTGTTATTGATGGTTCTGTGACAAGATCAGCAGCCATGAGGCTTCTGAGGAGTGGGGAAGTCGTGTTTGAAGGACAATGTACGTCTCTTAAGCGGGAAAAGCAGGATGTGGATACTGTGAAAAAGGGGAGTGAGTGTGGAGTAGTAATTAACAATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAAGTTGTAAGGAAGCCAAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATCGAGTGCTGA 2160 0.4472 MAWRELGKKRIYMNFTRALTATPFRHVTGSNFASTFAAQSVYASAKCLTDFINQSSQGVASLGTETKECGIRCFHASSQVWARSDGPLGLKTPKRVKYVRRDDRNQTPVKAPYGHSNVTAKKPNPDKTVEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDVAELAAMEAGINVKRLHSAEGSEILPRSAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSATKKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAVKDMAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLKNKMIEDKPTTSDDSMEVPLRVELPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALSQAATRASIKIILHRVIYHLLEEIGKLIIEKAPGTSETQVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGSVTRSAAMRLLRSGEVVFEGQCTSLKREKQDVDTVKKGSECGVVINNWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2284 719 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 63 710 IPR015760 -
Pvu1g2284 719 CDD mtIF2_IVc 608 697 - -
Pvu1g2284 719 Pfam Translation-initiation factor 2 497 590 IPR023115 -
Pvu1g2284 719 TIGRFAM small_GTP: small GTP-binding protein domain 201 354 IPR005225 GO:0005525
Pvu1g2284 719 Hamap Translation initiation factor IF-2 [infB]. 8 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Pvu1g2284 719 Pfam Elongation factor Tu GTP binding domain 203 359 IPR000795 GO:0003924|GO:0005525
Pvu1g2284 719 Gene3D Translation factors 371 487 - -
Pvu1g2284 719 TIGRFAM IF-2: translation initiation factor IF-2 126 702 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Pvu1g2284 719 Gene3D - 497 600 IPR036925 -
Pvu1g2284 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Pvu1g2284 719 MobiDBLite consensus disorder prediction 105 125 - -
Pvu1g2284 719 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 499 607 IPR036925 -
Pvu1g2284 719 Gene3D - 196 370 IPR027417 -
Pvu1g2284 719 SUPERFAMILY Translation proteins 603 704 IPR009000 -
Pvu1g2284 719 CDD IF2_mtIF2_II 374 469 IPR044145 -
Pvu1g2284 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 368 IPR027417 -
Pvu1g2284 719 Gene3D Translation factors 602 704 - -
Pvu1g2284 719 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 63 710 - -
Pvu1g2284 719 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Pvu1g2284 719 CDD IF2_eIF5B 202 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2284 Pvu-Chr1 48329312 48335156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2284 199 590 Eukaryotic Initiation Factors Gene Family AT1G21160 28.261 2.26e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2284 K02519 - gmx:100781314 1259.97