Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2280 ATGGCTTCTCTCATAGGCGTTTCTTCCATTTACCAAACGCCTACTCTCGAACTCTACCACAGGCCTAACGCTACTTCCACTTCCGCCGTTAGGTTGCAATGTTTGGACTCCAAATCCCACTTCAACAACCTCCTCCGAGCCCACCGCCACTCCCCTGGGCCTACCTTCAAAACGGGCCTCAAGCCCACTCCTACTTTCCTCCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCCACTTCGACCAAACCGACCACGAATTCCAAGACGCCTCCGATTCTCACACCGCCGAACCCCTCAACTCTGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCCAGAACCGTGGGATTACTCAGCTTTTCCCCATTCAGAGAGCGGTGTTAGTGCCTGCCCTACAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACTGGAAAGACACTAGCGTTCGGAATTCCAGTTATTAAAGGCCTCACTGAAGATGGAGACGAGACTTCTCTCAGAAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCACCTACCAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTATCTCAGCACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTAGTCAGCAGAGTGCTCTTTCACGAGGTGTAGATGTGGTGGTCGGGACCCCAGGGAGAATAATTGACTTGATTAATGGGAAGAGCCTTAAGCTGAGCGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAACTGATTTTGGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATAGCGGCCACTGCCACTTCAAAGCGGACAATTCTCTCTGACCTCGTAACTGTTTATGCAAAGGGTGGGAAGACTATAGTATTTACACAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAGCATCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTTGATATTCCCAACGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGTCGTGCTGGAAAACAAGGTAATGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCAGCAAGTTTGAATTTGTTAGTGCACCAGCTATGGAAGAGGTCTTGGAGTCATCTGCGGCGCAGGTTGTTGCGACACTTACTGGAGTTCATCCTGAGTCTATTCAGTTTTTCACCCCAACTGCTCAAAAACTGATTGAAGAGCAAGGAACAGCTGCCCTTGCAGCTGCCCTTGCACAACTTAGTGGATTTTCCCGACCTCCGTCATCCCGGTCTCTTATCACTCACGAACAGGGATGGATTACTTTGCAACTAACTCGGGATTCAGATGACAGGAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTTTTCATCAGCTGCTGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAGGGTTCAGGGAGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTGCTTACTAAGGATATACCACCTGGTAACACTGTTTCCAAGATCACCAAGCTACCTCCGTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGAAAGTTTTCTGACAGAGAACGAAGTAACCGAAGAGGATCCACTTCAAGGGGAGGTTTTAGTTCAAGGGGAGGTTTTGCTTCTAGGGATCGGAGAGGTTTTAAAACCTCACGGGGATGGGATGCGGAAGACTCTGATGATGACTTCAGTGATCGATCTAGTAGGAGAGGTGGTAGAAATTTTAAAAGTGGCGGCAGTAGCTGGTCTCGAGCAGGAGGTAGTAAAAGCAGTGGAGATGATTGGCTAATTGGAGGTAGACGATCGAGCAGGCCTTCGTCATCGGACAGATTTGGAGGGGCCTGTTTCAATTGCGGTGAATCTGGGCATCGTGCATCAGAGTGTCCAACCTCTTCAAACCGGCGAAGCTTTTTTTAA 2331 0.4788 MASLIGVSSIYQTPTLELYHRPNATSTSAVRLQCLDSKSHFNNLLRAHRHSPGPTFKTGLKPTPTFLPSAVATPNSSLLSEEAFKGLGRHFDQTDHEFQDASDSHTAEPLNSDELDISKLDLPSRLVDSLQNRGITQLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPVIKGLTEDGDETSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVSQQSALSRGVDVVVGTPGRIIDLINGKSLKLSEVQYLVLDEADQMLAVGFEEDVELILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGSKFEFVSAPAMEEVLESSAAQVVATLTGVHPESIQFFTPTAQKLIEEQGTAALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDDRRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLTKDIPPGNTVSKITKLPPLQDDGPPSDFYGKFSDRERSNRRGSTSRGGFSSRGGFASRDRRGFKTSRGWDAEDSDDDFSDRSSRRGGRNFKSGGSSWSRAGGSKSSGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASECPTSSNRRSFF* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2280 776 Gene3D - 116 327 IPR027417 -
Pvu1g2280 776 SMART ultradead3 134 340 IPR014001 -
Pvu1g2280 776 SMART c2hcfinal6 752 768 IPR001878 GO:0003676|GO:0008270
Pvu1g2280 776 CDD SF2_C_DEAD 337 466 - -
Pvu1g2280 776 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 65 765 - -
Pvu1g2280 776 Pfam Zinc knuckle 752 767 IPR001878 GO:0003676|GO:0008270
Pvu1g2280 776 SMART helicmild6 377 457 IPR001650 -
Pvu1g2280 776 ProSiteProfiles Zinc finger CCHC-type profile. 753 767 IPR001878 GO:0003676|GO:0008270
Pvu1g2280 776 MobiDBLite consensus disorder prediction 680 710 - -
Pvu1g2280 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 497 IPR001650 -
Pvu1g2280 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 323 IPR014001 -
Pvu1g2280 776 CDD GUCT_Hera 551 630 - -
Pvu1g2280 776 Pfam Helicase conserved C-terminal domain 350 457 IPR001650 -
Pvu1g2280 776 SUPERFAMILY Retrovirus zinc finger-like domains 738 771 IPR036875 GO:0003676|GO:0008270
Pvu1g2280 776 MobiDBLite consensus disorder prediction 651 665 - -
Pvu1g2280 776 MobiDBLite consensus disorder prediction 627 749 - -
Pvu1g2280 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 478 IPR027417 -
Pvu1g2280 776 MobiDBLite consensus disorder prediction 757 776 - -
Pvu1g2280 776 Pfam DEAD/DEAH box helicase 139 312 IPR011545 GO:0003676|GO:0005524
Pvu1g2280 776 Gene3D - 724 774 - -
Pvu1g2280 776 Pfam GUCT (NUC152) domain 544 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pvu1g2280 776 PANTHER - 65 765 - -
Pvu1g2280 776 CDD DEADc 126 324 - -
Pvu1g2280 776 MobiDBLite consensus disorder prediction 711 726 - -
Pvu1g2280 776 Gene3D - 341 538 IPR027417 -
Pvu1g2280 776 MobiDBLite consensus disorder prediction 762 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2280 Pvu-Chr1 48299401 48305198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2280 68 479 Eukaryotic Initiation Factors Gene Family AT1G72730 35.629 7.14e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2280 - - vra:106757668 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2280 1 48299401 48305198 Pvu7g2131 7 44622916 44628089 ECH
Pvu1g2280 1 48299401 48305198 Pvu1g2280 1 48299401 48305198 ECH
Pvu1g2280 1 48299401 48305198 Pvu7g2131 7 44622916 44628089 PCT