Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2263 ATGATTCAGGAGATGCTTCACTCCACTCGCTCGGCTATGACAAGAACCTCTTCCCATGTACCCTCCATTTATGACAATGATCTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGTACGAGGAGGTTCATCAGATAGATCAAGAAAGAGTAACGAGGAAAGAGTATACGAAGATGTCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTCCCCCTCTAAAGGAATCTTACATGAGCTCTTCGTATCAAAGCAATGCCCAAGATTCGTGCCATTCTGCCCAAACAAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTGTTAAGACAAGCAAAAGACTCTAAGCCCGTTACCCCAAGCTATACTCTCTTACAGCAGTGCTCACCTTCATCTCCTCTCAAGAAACAAAGAACAGATTCAACCCAAACACTGCCACCACCAAACGCACGGAACTTGGGGTTTGATCAAAGAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCGGTGTTTCTCAAATCTAGTACTTGTCAGGGAAGCCGTACAACTCAGCAGGCAAAAAATCATTCATCTCCACCAAGAACGGAGGAGATTGAAGCGCCCAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAGACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGGTCATGGAATTCACAGATACCAAGATCAACTACGTTGTGACCAAACCTCAGGCTCAGAATCACTTAGAGCCAAGGAAAACGCTTATAATAATAATAATAATAACACTTTCTGTCAAGAACCGTTCCTAGCTTCTTCCGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCATGGTATCAGGAAACATGAAGACACTGACGACTCAATATATTTAAGTGATAATGACGAAGAGCCTGAGAATATGGTAACGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACGCTGTGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGACTACCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCCGCAGCGCCTCACATGAACGGACCACATTTACCACAGTTAGTGGGAGCAGGAATGGGATTCAGGCCACCGCAGCTTCCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTCATCACATGTTTGGTTTCCCCAACCAAATACCAACCATGCCAATGCCTCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACAGAACCACCCTTGGCTGCCACCACCACACCCACCATACCAAACATGGCACAACATCTTGCTAAAACTGCTGCATCTCTTCAGGTGTCACTCCCCACCAACTTGGACCCTCAGGAACATGCATCAAACAGACTGCAGAATCCAGTGTCCTTTCATCCCCATGGCATTAGTACTCCACTAGCTACCCCTTTCATTTTTCCACAAAGGTAA 1650 0.4448 MIQEMLHSTRSAMTRTSSHVPSIYDNDLLELVWENGEVVVRGGSSDRSRKSNEERVYEDVSIKRTRLNPLYSLEDHLPPLKESYMSSSYQSNAQDSCHSAQTKNSCKLNEEFENLLRQAKDSKPVTPSYTLLQQCSPSSPLKKQRTDSTQTLPPPNARNLGFDQRTAKVNFSNFSIPAVFLKSSTCQGSRTTQQAKNHSSPPRTEEIEAPKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGHGIHRYQDQLRCDQTSGSESLRAKENAYNNNNNNTFCQEPFLASSVCSLGASNDPNHGIRKHEDTDDSIYLSDNDEEPENMVTQDREGNRVKRSRNAVVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLPQLVGAGMGFRPPQLPIPPLSAITDNRLHHMFGFPNQIPTMPMPHAPFFPIIGNSPTEPPLAATTTPTIPNMAQHLAKTAASLQVSLPTNLDPQEHASNRLQNPVSFHPHGISTPLATPFIFPQR* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2263 549 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 505 - -
Pvu1g2263 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 407 IPR036638 GO:0046983
Pvu1g2263 549 MobiDBLite consensus disorder prediction 319 341 - -
Pvu1g2263 549 MobiDBLite consensus disorder prediction 41 60 - -
Pvu1g2263 549 CDD bHLH_AtPIF_like 343 405 - -
Pvu1g2263 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Pvu1g2263 549 MobiDBLite consensus disorder prediction 126 161 - -
Pvu1g2263 549 MobiDBLite consensus disorder prediction 327 341 - -
Pvu1g2263 549 MobiDBLite consensus disorder prediction 187 245 - -
Pvu1g2263 549 Pfam Helix-loop-helix DNA-binding domain 347 392 IPR011598 GO:0046983
Pvu1g2263 549 Gene3D - 339 400 IPR036638 GO:0046983
Pvu1g2263 549 MobiDBLite consensus disorder prediction 201 218 - -
Pvu1g2263 549 PANTHER TRANSCRIPTION FACTOR PIF3 1 505 IPR044273 GO:0003700|GO:0006355
Pvu1g2263 549 MobiDBLite consensus disorder prediction 43 60 - -
Pvu1g2263 549 SMART finulus 349 398 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2263 Pvu-Chr1 48136109 48138918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2263 308 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 55.856 9.52e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g2263 HLH 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2263 K12126 - gmx:100784724 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2263 1 48136109 48138918 Pvu7g2144 7 44725941 44728234 PCT