LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g2262	ATGGGAAAACACTCTAGCTCTTCTTCCTCCTCAATTAGCAGCAGCAGCAACAACCACCGCCACCTTCTCATTTCAACTGCATCCTCTCTCACACAAGAACTTCCCACTGATCTTAGCCTTGGACTCAGCATTTCCGCCACTCATCATGTTGGCTCTTCTATTTCAAGGGGGCATTGGCAACAACCACACCACCCTCTTGTGAACATTTCACAAGCTGCTGAAGTGAATGATTGCAACGATCATAGCAGCTTGTTTGTGAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAGCTCAATATACTTGCTCATGGAGGCTATTATGAGTTAGTGAAGACTCTTGAACACATGTTCGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCTGAGAGATGCCATGTACTAACATACGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACAGTAAAGAGATTGAAGATCACAAGGGTAGACACATTCGGGTGCTAA	531	0.452	MGKHSSSSSSSISSSSNNHRHLLISTASSLTQELPTDLSLGLSISATHHVGSSISRGHWQQPHHPLVNISQAAEVNDCNDHSSLFVKVYMEGIPIGRKLNILAHGGYYELVKTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC*	177

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g2262	176	Gene3D	-	77	175	-	-
	Pvu1g2262	176	PANTHER	AUXIN-INDUCED PROTEIN	3	175	-	-
	Pvu1g2262	176	Pfam	AUX/IAA family	73	170	IPR033389	-
	Pvu1g2262	176	ProSiteProfiles	PB1 domain profile.	83	173	IPR000270	GO:0005515
	Pvu1g2262	176	SUPERFAMILY	CAD & PB1 domains	79	168	-	-
	Pvu1g2262	176	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	3	175	IPR003311	GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g2262	Pvu-Chr1	48126300	48127367	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g2262	87	168	B3 DNA Binding Superfamily	AT4G23980	39.024	1.45e-12	63.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Pvu1g2262		AUX_IAA	4e-28	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g2262	K14484		-	gmx:100818376	292.737

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g2262	1	48126300	48127367	Pvu7g2147	7	44756498	44758043	PCT