Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2260 ATGGAGAACCGACACCACCGTGAATTGACCTTCTTAAGCTCCGGCGGCGACTTTCTCAACCCCCCTTTGGATCACACAACCCACAACACCGATTCTACCATCAAAGAAATGGACTTCTTCTCATCACCTTCATCCCCACCTACTAATAAAAACAACAGTACCAATCATATCAACCATGATCATCAGAAGCATGTTAGAAATCAAGATCGCACTCATCGCCAAGGATCACCAACACACGTCTCTCATCATCCTGTAAACACCGGACTGAATTTAACTTGTGTGAGTGCTGGAGTCACAAAAGAAGAAAATGGTGAAAACCCTGAAGCTGAGATGAGTTCTCTTGAAAGTCAATTGCGGAGACTACAAGAAGATAATCGCAAGTTGAGAACTGTGCTGGACCAGATTACCAGAAGCTATACCCAACTACAAGCTCAGCTATTCATAACTCTGCAGAAACAAAAGCTTCATCAGAATAGTACAGAAGCAAATGGGATTGTGTCGGGAAAAAAAAATGTGGACCCTGCTGGAGCATGCAGCAAGTTAGAGGTGGTGAATGATGCATCGGTTTGTGATGAAAAGACTGATGGTGAGGTATCGGTTTGTCGCTCAAACAACGTGGAGGTAATGTCAAAGACACATGATGAGGCTCCTCAATTGATTAAACTGAATCTTGGAAAACAGGCTTGTCGTGATGCTGCAGAAGATGTTCTTGACCGGTCCTCTTCACAGAGCTGGGGCTCAAACAAGTTAGAAGAACAACCCAAAACTGCAGAACAAGTTGCTGCAGATCAGATTCCTCTCAGGAAAGCCAGGGTTTCCGTACGAGCTAGATCAGAAGCTCCACTGATCAGTGATGGTTGTCAGTGGAGAAAATATGGACAGAAAATGGCGAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCAGTGCGCAAACAGGTGCAGAGATGCGTAGAAGACAAGACAGTGTTGACAACAACCTACGAAGGCAATCACAATCACCCTCTGCCACCAGCTGCCACTGCCATGGCAAGTACCACGTCAGCAGCCGCCGCCATGCTCCTCTCAGGTTCAACACCCAGCAAGGAAGCCCTCACAAACTCTGCAGGATATTACTCTTCACTTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCACCATTCCCAACCATTACTCTCGACTTGACCCAAAACCCCAACGCCATGCACCTCCACCGTGTACCACCCCATGCCACTACGTTCCCTCTCCCACTGCATGCTTCCGGTGGCCCCCACCTTCTAGGCCACCCCTTGTTCTTTTCACAGAAGCTTCCACCTGCGGCATCGCCCCTACTTCATCCACGACAACCTTCATCTATGGTCGAAACGGTTAGTGCAGCCATTGCTTCGGATCCAAACTTCACTGCAGCTTTGGCAGCAGCAATCTCCTCAATCATAGGAGTACCAAGAGGCAGTGATGGTGGCAACAATGGAACTAGCGGTGCCATTGGGTCACCGCAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1560 0.4853 MENRHHRELTFLSSGGDFLNPPLDHTTHNTDSTIKEMDFFSSPSSPPTNKNNSTNHINHDHQKHVRNQDRTHRQGSPTHVSHHPVNTGLNLTCVSAGVTKEENGENPEAEMSSLESQLRRLQEDNRKLRTVLDQITRSYTQLQAQLFITLQKQKLHQNSTEANGIVSGKKNVDPAGACSKLEVVNDASVCDEKTDGEVSVCRSNNVEVMSKTHDEAPQLIKLNLGKQACRDAAEDVLDRSSSQSWGSNKLEEQPKTAEQVAADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCVEDKTVLTTTYEGNHNHPLPPAATAMASTTSAAAAMLLSGSTPSKEALTNSAGYYSSLPYASMATLSASAPFPTITLDLTQNPNAMHLHRVPPHATTFPLPLHASGGPHLLGHPLFFSQKLPPAASPLLHPRQPSSMVETVSAAIASDPNFTAALAAAISSIIGVPRGSDGGNNGTSGAIGSPQLPQSCTTFSTN* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2260 519 Pfam WRKY DNA -binding domain 285 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g2260 519 MobiDBLite consensus disorder prediction 239 254 - -
Pvu1g2260 519 Gene3D WRKY domain 268 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu1g2260 519 MobiDBLite consensus disorder prediction 1 89 - -
Pvu1g2260 519 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 519 IPR044810 GO:0003700
Pvu1g2260 519 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 29 519 - -
Pvu1g2260 519 ProSiteProfiles WRKY domain profile. 278 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g2260 519 SMART WRKY_cls 283 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g2260 519 Coils Coil 111 145 - -
Pvu1g2260 519 MobiDBLite consensus disorder prediction 497 519 - -
Pvu1g2260 519 MobiDBLite consensus disorder prediction 23 55 - -
Pvu1g2260 519 SUPERFAMILY WRKY DNA-binding domain 276 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu1g2260 519 MobiDBLite consensus disorder prediction 56 76 - -
Pvu1g2260 519 MobiDBLite consensus disorder prediction 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2260 Pvu-Chr1 48108877 48112906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2260 94 487 WRKY Transcription Factor Family AT4G04450 44.496 2.78e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu1g2260 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2260 - - gmx:100783661 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2260 1 48108877 48112906 Pvu7g2149 7 44775550 44778536 PCT